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Report for CCDS88872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88872.1 Public Mus musculus 16 Septin12 23 108 98 CCDS HistoryNCBI Gene:71089Re-query CCDS DB by CCDS ID:88872.1Re-query CCDS DB by GeneID:71089See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88872.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000230362.1 ENSMUSP00000154901.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230362.1Link to Ensembl Protein Viewer:ENSMUSP00000154901.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230362Re-query CCDS DB by Protein ID:ENSMUSP00000154901
Current member NCBI NM_001373945.1 NP_001360874.1 Accepted alive Link to Nucleotide Sequence:NM_001373945.1Link to Protein Sequence:NP_001360874.1Re-query CCDS DB by Nucleotide ID:NM_001373945Re-query CCDS DB by Protein ID:NP_001360874Link to BLAST:NP_001360874.1

Chromosomal Locations for CCDS 88872.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4987454 4987658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4987747 4987798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4988479 4988575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4991727 4991822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4991911 4992028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4992164 4992301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4993735 4993816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4993894 4994019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4996444 4996603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGATGAGAGGCGGTCGCCCTCCCCCTGCTCCTCAAGGCCCTCCAGCCCCAGGACCCCACCCAATGAGA
TGTTTGGTCCTGTGGGCATTGAGGCTGTGCTAGACCAGCTGAGGATCAAGGCTATGAAGACTGGGTTTGA
GTTCAATATCATGGTAGTAGGGCAGAGTGGGCTAGGCAAGTCCACCATGGTGAACACACTGTTCAAGTCC
AAAGTATGGCAGTCAACTGAACCCAACCTGGATGTACCCATGCCACAAACATTGGAGCTGCACTCTGTGA
CCCATGTCATCGAGGAGAAGGGATTGAAGCTGAAGCTGACAGTGACAGACACACCTGGCTTTGGAGACCA
GATCAACAATGACAAGTGCTGGGACCCTATCCTGAGCTACATCAACCAACAGTATGAGCAGTATCTACAA
GAGGAGCTCCTGATTACCCGCCAGCGCCACATCCCCGACACCCGTGTGCACTGCTGTGTGTACTTTGTGC
CACCCACTGGCCACTGCCTACGGCCCCTAGACATTGAGTTCCTGAGGCGGCTGTGCCGGACTGTGAATGT
GGTGCCGGTGATCGCCCGGGCTGACAGCCTGACCATTGAAGAACGAGATGCCTTCAGGAGCAGGATCCAG
CAAAACCTGAAAACTCACTGCATCGATGTGTACCCACAGAAGTGTTTCGACGAGGATGTCAATGACAGAC
TTCTCAACAGTAAGATTCGGGAGCAGATCCCTTTTGCTGTGGTCGGGGCTGACCGAGAGCACATAGTGAA
TGGGAGATGTGTCCTGGGCCGGAAGACCAAATGGGGCATCATCGAAGTGGAAAACATGGCGCACTGTGAG
TTTCTTCTCCTGAGAGATCTGCTCATCCGCTCCCATCTCCAGGACCTGAAGGACATCACCCACAATGTAC
ACTACGAGAACTACCGGGTACTCAGACTCAATGAGAGCCACGTGCTGCCCCGGGGGCCAGGCTGGGTGAA
CCTGGCTCCAGTCTCCCCTGGACAGCTGATGGCCCCTGGACCGGGAAAGGTCCGAAAGCGAGCAAACAAG
GATACCAAGGACGAAGAGTGCTGA

Translation (357 aa):
MDERRSPSPCSSRPSSPRTPPNEMFGPVGIEAVLDQLRIKAMKTGFEFNIMVVGQSGLGKSTMVNTLFKS
KVWQSTEPNLDVPMPQTLELHSVTHVIEEKGLKLKLTVTDTPGFGDQINNDKCWDPILSYINQQYEQYLQ
EELLITRQRHIPDTRVHCCVYFVPPTGHCLRPLDIEFLRRLCRTVNVVPVIARADSLTIEERDAFRSRIQ
QNLKTHCIDVYPQKCFDEDVNDRLLNSKIREQIPFAVVGADREHIVNGRCVLGRKTKWGIIEVENMAHCE
FLLLRDLLIRSHLQDLKDITHNVHYENYRVLRLNESHVLPRGPGWVNLAPVSPGQLMAPGPGKVRKRANK
DTKDEEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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