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Report for CCDS17064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17064.1 Public Mus musculus 2 Pcif1 23 108 98 CCDS HistoryNCBI Gene:228866Re-query CCDS DB by CCDS ID:17064.1Re-query CCDS DB by GeneID:228866See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17064.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041643.4 ENSMUSP00000039555.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041643.4Link to Ensembl Protein Viewer:ENSMUSP00000039555.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000041643Re-query CCDS DB by Protein ID:ENSMUSP00000039555
Current member NCBI NM_001374127.1 NP_001361056.1 Accepted alive Link to Nucleotide Sequence:NM_001374127.1Link to Protein Sequence:NP_001361056.1Re-query CCDS DB by Nucleotide ID:NM_001374127Re-query CCDS DB by Protein ID:NP_001361056Link to BLAST:NP_001361056.1
Current member NCBI NM_001374128.1 NP_001361057.1 Accepted alive Link to Nucleotide Sequence:NM_001374128.1Link to Protein Sequence:NP_001361057.1Re-query CCDS DB by Nucleotide ID:NM_001374128Re-query CCDS DB by Protein ID:NP_001361057Link to BLAST:NP_001361057.1
Original member Current member NCBI NM_146129.3 NP_666241.1 Accepted alive Link to Nucleotide Sequence:NM_146129.3Link to Protein Sequence:NP_666241.1Re-query CCDS DB by Nucleotide ID:NM_146129Re-query CCDS DB by Protein ID:NP_666241Link to BLAST:NP_666241.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001361056.1 706 P59114 706 100% 0 0
NP_001361057.1 706 P59114 706 100% 0 0
NP_666241.1 706 P59114 706 100% 0 0

Chromosomal Locations for CCDS 17064.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164884096 164884219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164884305 164884429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164885359 164885496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164885676 164885803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164885908 164886062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164886495 164886642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164886724 164886807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164887059 164887158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164888351 164888513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164889094 164889266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164889386 164889472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164889554 164889738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164890415 164890508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164890599 164890774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164890877 164891117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGGCCAATGAGAATCACGGCAGCCCCCGGGAAGGAGCCTCCCTTCTAAGTCACTCTCCAGGCACCTCCA
GTCAGAGCCAGCCCTGTTCTCCAAAGCCAGTTCGCCTGGTACAGGACCTTCCAGAGGAGCTGGTACATGC
AGGCTGGGAGAAGTGCTGGAGCCGGAGGGAGAGCCGTCCCTACTACTTCAACCGATTCACCAACCAGTCT
CTGTGGGAGATGCCCGTGCTGGGTCAGCACGACGTGCTTTCGGACCCTCTGGGGCTGAATGCAACCCCAC
TGCCCCAAGACTCAAGCTTGGTGGAAACGCCCCCAGTAGAGAACAAGTCCAGAAAGCGACAGCTCTCAGA
GGAGCAGCCAAGTGGCAACGGAGTGAAGAAGCCCAAGATTGAAATCCCTGTGACACCCACAAGCCAGTCA
GTGCCCAGTTCCCCTAGCATCCCAGGAACCCCAACACTGAAGATTTGGGGTTCATCCACTGAAGATAAAC
AGGCAGCTCTCCTCCGACCCACTGAGGTGTACTGGGACCTGGACATCCAGACCAATGCTGTCATCAAGCA
CAGGGGTCCTTCAGAGGTCCTGCCTCCACACCCTGATGTTGAGTTGCTCCGCTCGCAGCTCATCTTGAAG
CTCCGCCAGCACTACCGGGAACTGTGCCAGCAGCGGGAGGGCATTGAGCCGCCCCGGGAATCTTTCAACC
GCTGGATGCTGGAGCGCAAAGTGGTGGACAAAGGATGTGATCCTCTGTTGCCAAGCAACTGTGAACCAGT
TGTGTCTCCATCCATGTTTCGTGAAATTATGAATGACATTCCCATCAGGTTATCCCGAATCAAGTTCCGG
GAGGAAGCCAAACGCCTGCTCTTTAAATACGCAGAAGCTGCCAGGCGGCTCATTGAGTCCAGGAGTGCAT
CCCCTGACAGCAGAAAAGTGGTCAAATGGAACGTGGAGGACACCTTCAGCTGGCTGCGGAAAGAGCACTC
GGCCTCCAAGGAGGATTACATGGACCGCCTGGAGCACCTTCGGAGGCAGTGTGGGCCCCATGTCTCTGCT
GCAGCCAAGGACTCTGTGGAAGGCATCTGCAGCAAGATCTACCACATCTCCCTGGAATATGTTAAACGGA
TCCGAGAAAAGCACCTTGCTGTCCTCAAGGAAAACAACATCCCAGAGGAAGTGGAGGCCTCAGAGTTGGA
GCCCCGCCTGGTGTACTGCTACCCAGTGCGTCTGGCCGTGTCCGCACCCCCCATGCCTAGTGTGGAGATG
CACGTGGAGAACAGTGTGGTCTGCATCCGCTATAAGGGGGAGATGGTCAAGGTCAGCCGCAGCTACTTCA
GCAAACTGTGGCTCCTCTACCGCTATAGCTGTGTGGATGACTCTGCCTTTGAGAGGTTCCTGCCTCGAGT
CTGGTGTCTTCTCCGCCGATATCAGATGATGTTTGGCGTGGGCCTCTATGAGGGGACTGGCCTGCAGGGG
TCACTGCCAGTGCATGTCTTTGAGACCCTCCACCGACTCTTTGGTGTCAGTTTCGAGTGCTTCGCCTCCC
CCCTCAACTGCTACTTCCGCCAGTACTGTTCTGCCTTCCCTGACACAGATGGCTACTTTGGCTCCCGAGG
GCCCTGCCTGGACTTCACCCCGCTGAGTGGTTCCTTTGAGGCCAACCCTCCGTTCTGCGAGGAGCTCATG
GATGCTATGGTCTCTCACTTCGAGAAACTGCTGGAGAGCTCAGCAGAACCCCTGTCCTTCATCGTGTTCA
TCCCGGAGTGGCGGGAGCCCCCCACACCAGCGCTCACCAGGATGGAGCAGAGCCGCTTCAAACGCCACCA
GCTGGTCTTGCCTGCCTTTGAGCACGAGTACCGCAGTGGCTCCCAGCACATCTGCAAGAAGGAGGAAATG
CACTACAAGGCCGTCCACAACACGGCAGTGCTCTTCCTGCAGAATGGCCCCGGGTTCGCCAAGTGGGGGC
CGACGCCAGAGCGGCTGCAGGAGCTCACCGCTGCCTATAAGCAGTCGGGCCGCAGCCATGGCTCCAGCTC
TTCTTCCTCCTCCTCTTCCTCCTCCTCCGAGGCCAAGGACCGGGACTCAGGCCGGGAACAGGGCCCTAGT
AGAGAGCCTCACCCCACTTAA

Translation (706 aa):
MANENHGSPREGASLLSHSPGTSSQSQPCSPKPVRLVQDLPEELVHAGWEKCWSRRESRPYYFNRFTNQS
LWEMPVLGQHDVLSDPLGLNATPLPQDSSLVETPPVENKSRKRQLSEEQPSGNGVKKPKIEIPVTPTSQS
VPSSPSIPGTPTLKIWGSSTEDKQAALLRPTEVYWDLDIQTNAVIKHRGPSEVLPPHPDVELLRSQLILK
LRQHYRELCQQREGIEPPRESFNRWMLERKVVDKGCDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKFR
EEAKRLLFKYAEAARRLIESRSASPDSRKVVKWNVEDTFSWLRKEHSASKEDYMDRLEHLRRQCGPHVSA
AAKDSVEGICSKIYHISLEYVKRIREKHLAVLKENNIPEEVEASELEPRLVYCYPVRLAVSAPPMPSVEM
HVENSVVCIRYKGEMVKVSRSYFSKLWLLYRYSCVDDSAFERFLPRVWCLLRRYQMMFGVGLYEGTGLQG
SLPVHVFETLHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFTPLSGSFEANPPFCEELM
DAMVSHFEKLLESSAEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLVLPAFEHEYRSGSQHICKKEEM
HYKAVHNTAVLFLQNGPGFAKWGPTPERLQELTAAYKQSGRSHGSSSSSSSSSSSSEAKDRDSGREQGPS
REPHPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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