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Report for CCDS42787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42787.1 Public Homo sapiens 2 PJVK 24 110 108 CCDS HistoryNCBI Gene:494513Re-query CCDS DB by CCDS ID:42787.1Re-query CCDS DB by GeneID:494513See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42787.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375129.8 ENSP00000364271.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375129.8Link to Ensembl Protein Viewer:ENSP00000364271.4Re-query CCDS DB by Nucleotide ID:ENST00000375129Re-query CCDS DB by Protein ID:ENSP00000364271
Original member Current member EBI ENST00000644580.2 ENSP00000495855.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000644580.2Link to Ensembl Protein Viewer:ENSP00000495855.2Re-query CCDS DB by Nucleotide ID:ENST00000644580Re-query CCDS DB by Protein ID:ENSP00000495855
Original member Current member NCBI NM_001042702.5 NP_001036167.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042702.5Link to Protein Sequence:NP_001036167.1Re-query CCDS DB by Nucleotide ID:NM_001042702Re-query CCDS DB by Protein ID:NP_001036167Link to BLAST:NP_001036167.1
Original member Current member NCBI NM_001369912.1 NP_001356841.1 Accepted alive Link to Nucleotide Sequence:NM_001369912.1Link to Protein Sequence:NP_001356841.1Re-query CCDS DB by Nucleotide ID:NM_001369912Re-query CCDS DB by Protein ID:NP_001356841Link to BLAST:NP_001356841.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036167.1 352 Q0ZLH3 352 100% 0 0
NP_001356841.1 352 Q0ZLH3 352 100% 0 0

Chromosomal Locations for CCDS 42787.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 178453410 178453620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178454332 178454527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178456010 178456151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178458510 178458627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178460348 178460446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178460982 178461274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGTTTGCTGCTGCTACCAAGAGCTTTGTCAAGCAAGTTGGAGATGGAGGGAGATTAGTTCCTGTTCCAA
GCCTCAGTGAAGCTGACAAATATCAACCTCTAAGTCTGGTGGTAAAAAAGAAGCGATGCTTTCTGTTTCC
TAGATATAAATTTACTTCAACACCTTTTACACTGAAAGATATTCTCCTAGGAGACAGAGAAATTTCAGCT
GGTATTTCATCTTATCAATTACTGAATTATGAAGATGAATCAGATGTTTCACTCTATGGAAGGCGAGGTA
ACCATATTGTAAATGACGTTGGGATTAACGTTGCTGGATCAGATTCCATTGCAGTGAAAGCTTCATTTGG
TATAGTAACCAAACATGAAGTGGAAGTATCAACATTACTCAAAGAAATTACTACACGAAAAATTAACTTT
GACCACAGCTTGATACGTCAGTCAAGGAGCAGCAGAAAGGCAGTATTGTGTGTGGTCATGGAGAGCATCC
GAACCACACGACAGTGCTCACTGTCTGTGCATGCTGGAATTCGAGGGGAAGCAATGCGGTTTCACTTTAT
GGATGAACAGAATCCCAAGGGAAGGGACAAAGCTATTGTTTTCCCAGCACATACAACCATAGCTTTCAGT
GTTTTTGAACTCTTCATATACCTGGATGGTGCCTTTGACCTTTGTGTCACTTCAGTGTCAAAAGGAGGAT
TTGAAAGGGAAGAAACGGCAACATTTGCACTGCTGTACAGGTTGAGAAATATCCTATTTGAAAGAAATAG
AAGAGTGATGGATGTCATTTCTCGTTCACAGCTTTACTTGGATGATCTTTTTTCTGACTACTATGACAAA
CCTCTCAGCATGACTGATATTTCACTCAAAGAAGGGACCCATATCCGAGTTAACTTACTTAATCACAACA
TTCCCAAAGGGCCTTGCATACTCTGTGGAATGGGGAACTTCAAAAGGGAGACAGTTTATGGGTGCTTTCA
GTGTTCTGTTGATGGTCAGAAGTATGTGAGACTTCATGCAGTTCCTTGTTTTGATATTTGGCACAAGAGG
ATGAAATAA

Translation (352 aa):
MFAAATKSFVKQVGDGGRLVPVPSLSEADKYQPLSLVVKKKRCFLFPRYKFTSTPFTLKDILLGDREISA
GISSYQLLNYEDESDVSLYGRRGNHIVNDVGINVAGSDSIAVKASFGIVTKHEVEVSTLLKEITTRKINF
DHSLIRQSRSSRKAVLCVVMESIRTTRQCSLSVHAGIRGEAMRFHFMDEQNPKGRDKAIVFPAHTTIAFS
VFELFIYLDGAFDLCVTSVSKGGFEREETATFALLYRLRNILFERNRRVMDVISRSQLYLDDLFSDYYDK
PLSMTDISLKEGTHIRVNLLNHNIPKGPCILCGMGNFKRETVYGCFQCSVDGQKYVRLHAVPCFDIWHKR
MK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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