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Report for CCDS25539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25539.1 Public Mus musculus 11 Mrc2 23 108 98 CCDS HistoryNCBI Gene:17534Re-query CCDS DB by CCDS ID:25539.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 25539.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100335.9 ENSMUSP00000097909.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100335.9Link to Ensembl Protein Viewer:ENSMUSP00000097909.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100335Re-query CCDS DB by Protein ID:ENSMUSP00000097909
Original member Current member NCBI NM_008626.3 NP_032652.3 Accepted alive Link to Nucleotide Sequence:NM_008626.3Link to Protein Sequence:NP_032652.3Re-query CCDS DB by Nucleotide ID:NM_008626Re-query CCDS DB by Protein ID:NP_032652Link to BLAST:NP_032652.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032652.3 1479 Q64449-1 1479 100% 0 0

Chromosomal Locations for CCDS 25539.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 105292787 105292901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105325502 105325903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105327972 105328145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105328277 105328441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105328663 105328776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105329225 105329368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105331884 105332072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105332236 105332390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105333624 105333731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105336137 105336252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105336625 105336773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105337628 105337845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105338792 105338934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105340218 105340320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105340538 105340676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105340798 105340833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105341094 105341254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105341351 105341418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105343093 105343193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105343456 105343598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105346210 105346324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105346430 105346593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105346720 105346828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105347235 105347473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105347599 105347767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105347860 105348006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105348307 105348426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105348598 105348777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105349568 105349594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105349699 105349925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4440 nt):
ATGGTACCCATCCGACCTGCCCTCGCGCCCTGGCCTCGTCACCTGCTGCGCTGCGTCTTGCTTCTCGGGG
GACTGCGTCTCGGCCACCCGGCGGACTCCGCCGCCGCCCTCCTGGAGCCTGATGTCTTCCTCATCTTCAG
CCAGGGGATGCAGGGCTGTCTGGAGGCCCAGGGTGTGCAGGTCCGAGTCACCCCAGTCTGCAATGCCAGT
CTCCCTGCCCAGCGCTGGAAGTGGGTCTCCCGGAACCGACTCTTCAACCTGGGTGCCACACAGTGCCTGG
GTACAGGCTGGCCAGTCACCAACACCACAGTTTCCTTGGGCATGTATGAGTGTGACAGAGAGGCCTTGAG
TCTTCGATGGCAGTGTCGTACACTAGGGGACCAGTTGTCCCTGCTTCTGGGGGCTCGTGCAAGCAATGCA
TCCAAGCCTGGCACCCTGGAGCGCGGTGACCAGACCCGCAGTGGCCATTGGAACATCTATGGCAGTGAAG
AAGACCTATGTGCTCGACCTTACTATGAGGTCTACACCATCCAGGGAAACTCACACGGAAAGCCGTGCAC
TATCCCCTTCAAATACGACAACCAGTGGTTCCACGGCTGCACCAGCACTGGCAGAGAAGATGGGCACCTG
TGGTGTGCCACCACCCAGGACTACGGCAAAGATGAGCGCTGGGGCTTCTGCCCCATCAAGAGTAACGACT
GTGAGACCTTCTGGGACAAAGACCAGCTGACTGACAGCTGTTACCAGTTTAACTTCCAATCCACACTGTC
CTGGAGGGAGGCCTGGGCCAGCTGCGAGCAGCAGGGTGCAGACTTGCTGAGTATCACGGAGATCCACGAG
CAGACCTACATCAACGGGCTCCTCACGGGCTACAGCTCCACGCTATGGATTGGCCTTAATGACCTGGATA
CCAGTGGAGGCTGGCAGTGGTCAGACAACTCACCCCTCAAGTACCTCAACTGGGAGAGTGATCAGCCGGA
CAACCCAGGTGAGGAGAACTGTGGAGTGATCCGGACTGAGTCCTCAGGCGGCTGGCAGAACCATGACTGC
AGCATCGCCCTGCCCTATGTTTGCAAGAAGAAACCCAACGCTACGGTCGAGCCCATCCAGCCAGACCGGT
GGACCAATGTCAAGGTGGAATGTGACCCCAGCTGGCAGCCCTTCCAGGGCCACTGCTACCGCCTGCAGGC
CGAGAAGCGCAGCTGGCAGGAGTCCAAGAGGGCGTGTCTGCGGGGTGGGGGTGACCTCCTTAGCATCCAC
AGCATGGCTGAGCTGGAGTTCATCACCAAACAGATCAAGCAAGAGGTGGAGGAGCTATGGATTGGCCTCA
ATGATTTGAAACTGCAGATGAATTTTGAGTGGTCCGACGGGAGCCTCGTGAGCTTCACCCACTGGCACCC
CTTTGAGCCCAACAACTTTCGTGACAGCCTGGAGGACTGTGTCACCATCTGGGGGCCGGAAGGACGCTGG
AACGACAGTCCCTGTAACCAGTCCTTGCCATCCATTTGCAAGAAGGCAGGCCGGCTGAGCCAGGGCGCTG
CGGAGGAGGACCACGGCTGCCGGAAGGGTTGGACGTGGCATAGCCCATCCTGCTACTGGCTGGGAGAGGA
CCAAGTGATCTACAGTGATGCCCGGCGCCTGTGTACTGACCATGGCTCTCAGCTGGTCACCATCACCAAC
AGGTTTGAGCAGGCCTTCGTCAGCAGCCTCATCTATAACTGGGAGGGCGAATACTTCTGGACAGCCCTGC
AAGACCTCAACAGTACTGGCTCCTTCCGTTGGCTCAGTGGGGATGAAGTCATATATACCCATTGGAATCG
AGACCAGCCTGGGTACAGACGTGGAGGCTGTGTGGCTCTGGCCACTGGCAGTGCCATGGGACTGTGGGAG
GTGAAGAACTGCACATCGTTCCGGGCTCGCTACATCTGCCGACAGAGCCTGGGCACACCGGTCACACCAG
AGCTGCCTGGGCCAGACCCCACGCCCAGCCTCACTGGCTCCTGTCCCCAGGGCTGGGTCTCAGACCCCAA
ACTCCGACACTGCTATAAGGTGTTCAGCTCAGAGCGGCTGCAGGAGAAGAAGAGTTGGATCCAGGCCCTG
GGGGTCTGCCGGGAGTTGGGGGCCCAGCTGCTGAGTCTGGCCAGCTATGAGGAGGAGCACTTTGTGGCCC
ACATGCTCAACAAGATCTTTGGTGAGTCAGAGCCTGAGAGCCATGAGCAGCACTGGTTTTGGATTGGCCT
GAACCGCAGAGACCCTAGAGAGGGTCACAGCTGGCGCTGGAGCGACGGTCTAGGGTTTTCCTACCACAAT
TTTGCCCGGAGCCGACATGATGACGATGATATCCGAGGCTGTGCAGTGCTGGACCTGGCCTCCCTGCAGT
GGGTACCCATGCAGTGCCAGACGCAGCTTGACTGGATCTGCAAGATCCCTAGAGGTGTGGATGTGCGGGA
ACCAGACATTGGTCGACAAGGCCGTCTGGAGTGGGTACGCTTTCAGGAGGCCGAGTACAAGTTTTTTGAG
CACCACTCCTCGTGGGCGCAGGCACAGCGCATCTGCACCTGGTTCCAGGCAGATCTGACCTCCGTTCACA
GCCAAGCAGAACTGGACTTCCTGGGGCAAAACCTGCAGAAGCTGTCCTCAGACCAGGAGCAGCACTGGTG
GATCGGCCTGCACACCTTGGAGAGTGACGGACGCTTCAGGTGGACAGATGGTTCTATTATAAACTTCATC
TCTTGGGCACCGGGAAAACCTAGACCCATTGGCAAGGACAAGAAGTGTGTATACATGACAGCCAGACAAG
AGGACTGGGGGGACCAGAGGTGCCATACGGCTTTGCCCTACATCTGTAAGCGCAGCAATAGCTCTGGAGA
GACTCAGCCCCAAGACTTGCCACCTTCAGCCTTAGGAGGCTGCCCCTCCGGTTGGAACCAGTTCCTCAAT
AAGTGTTTCCGAATCCAGGGCCAGGACCCCCAGGACAGGGTGAAATGGTCAGAGGCACAGTTCTCCTGTG
AACAGCAAGAAGCCCAGCTGGTCACCATTGCAAACCCCTTAGAGCAAGCATTTATCACAGCCAGCCTCCC
CAACGTGACCTTTGACCTTTGGATTGGCCTGCATGCCTCTCAGAGGGACTTCCAGTGGATTGAACAAGAA
CCCCTGCTCTATACCAACTGGGCACCAGGAGAGCCCTCTGGCCCCAGCCCTGCTCCCAGTGGCACCAAGC
CGACCAGCTGTGCGGTGATCCTGCACAGCCCCTCAGCCCACTTCACTGGCCGCTGGGATGATCGGAGCTG
CACAGAGGAGACGCATGGCTTCATCTGCCAGAAGGGCACAGACCCCTCGCTAAGCCCATCCCCAGCAGCA
ACACCCCCTGCCCCGGGCGCTGAGCTCTCCTATCTCAACCACACCTTCCGGCTGCTGCAGAAGCCACTGC
GCTGGAAAGATGCTCTCCTGCTGTGTGAGAGCCGAAATGCCAGCCTGGCACACGTGCCCGATCCCTACAC
ACAAGCCTTCCTCACACAGGCTGCACGGGGGCTGCAAACACCACTGTGGATCGGGCTGGCCAGTGAGGAG
GGCTCACGGAGGTATTCCTGGCTCTCAGAGGAGCCTCTGAATTATGTGAGCTGGCAAGATGAGGAGCCCC
AGCACTCGGGAGGCTGTGCCTACGTGGATGTGGATGGAACCTGGCGCACCACCAGCTGTGATACCAAGCT
GCAGGGGGCAGTGTGTGGGGTGAGCAGGGGGCCCCCACCCCGAAGGATAAACTACCGTGGCAGCTGTCCT
CAGGGCTTGGCTGACTCGTCCTGGATTCCCTTCAGGGAGCATTGCTATTCTTTCCACATGGAGGTGCTGT
TGGGCCACAAGGAGGCGCTGCAGCGCTGTCAGAAAGCTGGTGGGACGGTTCTGTCCATTCTTGATGAGAT
GGAGAATGTGTTTGTCTGGGAGCACCTGCAGACAGCTGAAGCCCAAAGTCGAGGTGCCTGGTTGGGCATG
AACTTCAACCCCAAAGGAGGCACGCTGGTCTGGCAAGACAACACAGCTGTGAACTATTCTAACTGGGGGC
CCCCTGGCCTGGGCCCTAGCATGCTAAGCCACAACAGCTGCTACTGGATCCAGAGCAGCAGCGGACTGTG
GCGCCCCGGGGCTTGTACCAACATCACCATGGGAGTTGTCTGCAAGCTCCCTAGAGTGGAAGAGAACAGC
TTCTTGCCATCAGCAGCCCTCCCCGAGAGCCCGGTTGCCCTGGTGGTGGTGCTGACAGCGGTGCTGCTCC
TCCTGGCCTTGATGACGGCAGCCCTCATCCTCTACCGGCGCCGACAGAGTGCGGAGCGTGGGTCCTTCGA
GGGGGCCCGCTACAGTCGCAGCAGCCACTCTGGCCCCGCAGAGGCCACCGAGAAGAACATTCTGGTGTCT
GACATGGAAATGAACGAACAGCAAGAATAG

Translation (1479 aa):
MVPIRPALAPWPRHLLRCVLLLGGLRLGHPADSAAALLEPDVFLIFSQGMQGCLEAQGVQVRVTPVCNAS
LPAQRWKWVSRNRLFNLGATQCLGTGWPVTNTTVSLGMYECDREALSLRWQCRTLGDQLSLLLGARASNA
SKPGTLERGDQTRSGHWNIYGSEEDLCARPYYEVYTIQGNSHGKPCTIPFKYDNQWFHGCTSTGREDGHL
WCATTQDYGKDERWGFCPIKSNDCETFWDKDQLTDSCYQFNFQSTLSWREAWASCEQQGADLLSITEIHE
QTYINGLLTGYSSTLWIGLNDLDTSGGWQWSDNSPLKYLNWESDQPDNPGEENCGVIRTESSGGWQNHDC
SIALPYVCKKKPNATVEPIQPDRWTNVKVECDPSWQPFQGHCYRLQAEKRSWQESKRACLRGGGDLLSIH
SMAELEFITKQIKQEVEELWIGLNDLKLQMNFEWSDGSLVSFTHWHPFEPNNFRDSLEDCVTIWGPEGRW
NDSPCNQSLPSICKKAGRLSQGAAEEDHGCRKGWTWHSPSCYWLGEDQVIYSDARRLCTDHGSQLVTITN
RFEQAFVSSLIYNWEGEYFWTALQDLNSTGSFRWLSGDEVIYTHWNRDQPGYRRGGCVALATGSAMGLWE
VKNCTSFRARYICRQSLGTPVTPELPGPDPTPSLTGSCPQGWVSDPKLRHCYKVFSSERLQEKKSWIQAL
GVCRELGAQLLSLASYEEEHFVAHMLNKIFGESEPESHEQHWFWIGLNRRDPREGHSWRWSDGLGFSYHN
FARSRHDDDDIRGCAVLDLASLQWVPMQCQTQLDWICKIPRGVDVREPDIGRQGRLEWVRFQEAEYKFFE
HHSSWAQAQRICTWFQADLTSVHSQAELDFLGQNLQKLSSDQEQHWWIGLHTLESDGRFRWTDGSIINFI
SWAPGKPRPIGKDKKCVYMTARQEDWGDQRCHTALPYICKRSNSSGETQPQDLPPSALGGCPSGWNQFLN
KCFRIQGQDPQDRVKWSEAQFSCEQQEAQLVTIANPLEQAFITASLPNVTFDLWIGLHASQRDFQWIEQE
PLLYTNWAPGEPSGPSPAPSGTKPTSCAVILHSPSAHFTGRWDDRSCTEETHGFICQKGTDPSLSPSPAA
TPPAPGAELSYLNHTFRLLQKPLRWKDALLLCESRNASLAHVPDPYTQAFLTQAARGLQTPLWIGLASEE
GSRRYSWLSEEPLNYVSWQDEEPQHSGGCAYVDVDGTWRTTSCDTKLQGAVCGVSRGPPPRRINYRGSCP
QGLADSSWIPFREHCYSFHMEVLLGHKEALQRCQKAGGTVLSILDEMENVFVWEHLQTAEAQSRGAWLGM
NFNPKGGTLVWQDNTAVNYSNWGPPGLGPSMLSHNSCYWIQSSSGLWRPGACTNITMGVVCKLPRVEENS
FLPSAALPESPVALVVVLTAVLLLLALMTAALILYRRRQSAERGSFEGARYSRSSHSGPAEATEKNILVS
DMEMNEQQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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