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Report for CCDS92404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92404.1 Public Homo sapiens 17 TMC6 24 110 108 CCDS HistoryNCBI Gene:11322Re-query CCDS DB by CCDS ID:92404.1Re-query CCDS DB by GeneID:11322See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92404.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000698548.1 ENSP00000513791.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698548.1Link to Ensembl Protein Viewer:ENSP00000513791.1Re-query CCDS DB by Nucleotide ID:ENST00000698548Re-query CCDS DB by Protein ID:ENSP00000513791
Original member Current member NCBI NM_001374593.1 NP_001361522.1 Accepted alive Link to Nucleotide Sequence:NM_001374593.1Link to Protein Sequence:NP_001361522.1Re-query CCDS DB by Nucleotide ID:NM_001374593Re-query CCDS DB by Protein ID:NP_001361522Link to BLAST:NP_001361522.1
Original member Current member NCBI NM_001374594.1 NP_001361523.1 Accepted alive Link to Nucleotide Sequence:NM_001374594.1Link to Protein Sequence:NP_001361523.1Re-query CCDS DB by Nucleotide ID:NM_001374594Re-query CCDS DB by Protein ID:NP_001361523Link to BLAST:NP_001361523.1

Chromosomal Locations for CCDS 92404.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 78113148 78113211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78113548 78113624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78117269 78117347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78117468 78117644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78117802 78117935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78118971 78119046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78119297 78119392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78121013 78121164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78121556 78121711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78122605 78122749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78123989 78124179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78124524 78124781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78124889 78124985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78125158 78125263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78125726 78125884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78126277 78126366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78126524 78126648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78126777 78126832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2238 nt):
ATGGCCCAGCCACTGGCCTTCATCCTCGATGTCCCTGAGACCCCAGGGGACCAGGGCCAGGGCCCCAGCC
CCTATGATGAAAGCGAAGTGCACGACTCCTTCCAGCAGCTCATCCAGGAGCAGAGCCAGTGCACGGCCCA
GGAGGGGCTGGAGCTGCAGCAGAGAGAGCGGGAGGTGACAGGAAGTAGCCAGCAGACACTCTGGCGGCCC
GAGGGCACCCAGAGCACGGCCACACTCCGCATCCTGGCCAGCATGCCCAGCCGCACCATTGGCCGCAGCC
GAGGTGCCATCATCTCCCAGTACTACAACCGCACGGTGCAGCTTCGGTGCAGGAGCAGCCGGCCCCTGCT
CGGGAACTTTGTCCGCTCCGCCTGGCCCAGCCTCCGCCTGTACGACCTGGAGCTGGACCCCACGGCCCTG
GAGGAGGAGGAGAAGCAGAGCCTCCTGGTGAAGGAGCTCCAGAGCCTGGCAGTGGCACAGCGGGACCACA
TGCTTCGCGGGATGCCCTTAAGCCTGGCTGAGAAACGCAGCCTGCGAGAGAAGAGCAGGACCCCGAGGGG
GAAGTGGAGGGGCCAGCCGGGCAGCGGCGGGGTCTGCTCCTGCTGTGGCCGGCTCAGATATGCCTGCGTG
CTGGCCTTGCACAGCCTGGGCCTGGCGCTGCTCTCCGCCCTGCAGGCCCTGATGCCGTGGCGCTACGCCC
TGAAGCGCATCGGGGGCCAGTTCGGCTCCAGCGTGCTCTCCTACTTCCTCTTTCTCAAGACCCTGCTGGC
TTTCAATGCCCTCCTGCTGCTGCTGCTGGTGGCCTTCATCATGGGCCCTCAGGTCGCCTTCCCACCCGCC
CTGCCGGGCCCTGCCCCCGTCTGCACAGGCCTGGAGCTCCTCACAGGCGCGGGTTGCTTCACCCACACCG
TCATGTACTACGGCCACTACAGTAACGCCACGCTGAACCAGCCGTGTGGCAGCCCCCTGGATGGCAGCCA
GTGCACACCCAGGGTGGGTGGCCTGCCCTACAACATGCCCCTGGCCTACCTCTCCACTGTGGGCGTGAGC
TTCTTTATCACCTGCATCACCCTGGTGTACAGCATGGCTCACTCTTTCGGGGAGAGCTACCGGGTGGGCA
GCACCTCTGGCATCCACGCCATCACCGTCTTCTGCTCCTGGGACTACAAGGTGACGCAGAAGCGGGCCTC
CCGCCTCCAGCAGGACAATATTCGCACCCGGCTGAAGGAGCTGCTGGCCGAGTGGCAGCTGCGGCACAGC
CCCAGGAGCGTGTGCGGGAGGCTGCGGCAGGCGGCTGTGCTGGGGCTTGTGTGGCTGCTGTGTCTGGGGA
CCGCGCTGGGCTGCGCCGTGGCCGTCCACGTCTTCTCGGAGTTCATGATCCAGAGTCCAGAGGCTGCTGG
CCAGGAGGCTGTGCTGCTGGTCCTGCCCCTGGTGGTTGGCCTCCTCAACCTGGGGGCCCCCTACCTGTGC
CGTGTCCTGGCCGCCCTGGAGCCGCATGACTCCCCGGTACTGGAGGTGTACGTGGCCATCTGCAGGATTA
TCTCCGAGAAGAAGCTGAAGAGGAGGCGGAAGCCGGAGTTTGACATTGCCCGGAATGTCCTGGAGCTGAT
TTATGGGCAGACTCTGACCTGGCTGGGGGTGCTCTTCTCGCCCCTCCTCCCCGCCGTGCAGATCATCAAG
CTGCTGCTCGTCTTCTATGTCAAGAAGACCAGCCTTCTGGCCAACTGCCAGGCGCCGCGCCGGCCCTGGC
TGGCCTCACACATGAGCACCGTCTTCCTCACGCTGCTCTGCTTCCCCGCCTTCCTGGGCGCCGCTGTCTT
CCTCTGCTACGCCGTCTGGCAGGTGAAGCCCTCGAGCACCTGCGGCCCCTTCCGGACCCTGGACACCATG
TACGAGGCCGGCAGGGTGTGGGTGCGCCACCTGGAGGCGGCAGGCCCCAGGGTCTCCTGGCTGCCCTGGG
TGCACCGGTACCTGATGGAAAACACCTTCTTTGTCTTCCTGGTGTCAGCCCTGCTGCTGGCCGTGATCTA
CCTCAACATCCAGGTGGTGCGGGGCCAGCGCAAGGTCATCTGCCTGCTCAAGGAGCAGATCAGCAATGAG
GGTGAGGACAAAATCTTCTTAATCAACAAGCTTCACTCCATCTACGAGAGGAAGGAGAGGGAGGAGAGGA
GCAGGGTTGGGACAACCGAGGAGGCTGCGGCACCCCCTGCCCTGCTCACAGATGAACAGGATGCCTAG

Translation (745 aa):
MAQPLAFILDVPETPGDQGQGPSPYDESEVHDSFQQLIQEQSQCTAQEGLELQQREREVTGSSQQTLWRP
EGTQSTATLRILASMPSRTIGRSRGAIISQYYNRTVQLRCRSSRPLLGNFVRSAWPSLRLYDLELDPTAL
EEEEKQSLLVKELQSLAVAQRDHMLRGMPLSLAEKRSLREKSRTPRGKWRGQPGSGGVCSCCGRLRYACV
LALHSLGLALLSALQALMPWRYALKRIGGQFGSSVLSYFLFLKTLLAFNALLLLLLVAFIMGPQVAFPPA
LPGPAPVCTGLELLTGAGCFTHTVMYYGHYSNATLNQPCGSPLDGSQCTPRVGGLPYNMPLAYLSTVGVS
FFITCITLVYSMAHSFGESYRVGSTSGIHAITVFCSWDYKVTQKRASRLQQDNIRTRLKELLAEWQLRHS
PRSVCGRLRQAAVLGLVWLLCLGTALGCAVAVHVFSEFMIQSPEAAGQEAVLLVLPLVVGLLNLGAPYLC
RVLAALEPHDSPVLEVYVAICRIISEKKLKRRRKPEFDIARNVLELIYGQTLTWLGVLFSPLLPAVQIIK
LLLVFYVKKTSLLANCQAPRRPWLASHMSTVFLTLLCFPAFLGAAVFLCYAVWQVKPSSTCGPFRTLDTM
YEAGRVWVRHLEAAGPRVSWLPWVHRYLMENTFFVFLVSALLLAVIYLNIQVVRGQRKVICLLKEQISNE
GEDKIFLINKLHSIYERKEREERSRVGTTEEAAAPPALLTDEQDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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