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Report for CCDS31327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31327.1 Public Homo sapiens 11 DEAF1 24 110 108 CCDS HistoryNCBI Gene:10522Re-query CCDS DB by CCDS ID:31327.1Re-query CCDS DB by GeneID:10522See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31327.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382409.4 ENSP00000371846.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382409.4Link to Ensembl Protein Viewer:ENSP00000371846.3Re-query CCDS DB by Nucleotide ID:ENST00000382409Re-query CCDS DB by Protein ID:ENSP00000371846
Original member Current member NCBI NM_021008.4 NP_066288.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021008.4Link to Protein Sequence:NP_066288.2Re-query CCDS DB by Nucleotide ID:NM_021008Re-query CCDS DB by Protein ID:NP_066288Link to BLAST:NP_066288.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066288.2 565 O75398-1 565 100% 0 0

Chromosomal Locations for CCDS 31327.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 644550 644654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 653962 654051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 674536 674783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 678694 678822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 679688 679816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 680963 681089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 684898 684963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 686858 686997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 687911 688057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 688331 688460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 691501 691598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 694759 695047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1698 nt):
ATGGAGGACTCGGACTCGGCGGCAAAGCAGCTGGGCCTGGCTGAGGCGGCGGCGGTGGCGGCCGCGGCCG
CTGTGGCGGCGGCGGCCGCGGCCGCGGCAGGAGGCGAGGCGGAGGAGCCGGTGCTGAGCAGGGACGAGGA
CTCGGAGGAGGACGCAGACTCGGAGGCGGAGCGGGAGACGCCGCGGGTCACGGCAGTGGCGGTGATGGCG
GCGGAGCCCGGGCACATGGACATGGGCGCCGAGGCCCTGCCCGGCCCCGACGAGGCCGCCGCTGCCGCAG
CCTTCGCAGAGGTGACCACAGTGACAGTGGCCAACGTGGGGGCTGCTGCAGACAATGTCTTCACCACGTC
TGTGGCGAACGCGGCATCCATCTCAGGACATGTTCTGTCTGGTAGGACGGCCCTTCAGATCGGGGACAGC
CTGAACACCGAAAAAGCGACACTGATTGTCGTCCACACAGATGGGAGCATCGTGGAGACCACCGGGCTGA
AAGGCCCGGCAGCTCCCCTCACCCCAGGTCCTCAGTCTCCTCCAACCCCTCTGGCTCCCGGCCAAGAAAA
AGGTGGAACTAAATACAACTGGGACCCTTCTGTGTACGACAGTGAGCTGCCCGTACGGTGCCGGAACATC
AGCGGCACTCTGTACAAGAACAGGCTCGGCTCAGGCGGCCGGGGACGGTGCATCAAGCAGGGGGAGAACT
GGTACAGTCCCACCGAGTTTGAGGCCATGGCAGGAAGAGCCAGCAGTAAGGACTGGAAAAGAAGCATTCG
CTACGCGGGCCGACCCTTGCAGTGCCTCATCCAGGATGGGATCTTAAACCCTCACGCTGCCTCTTGCACC
TGTGCTGCCTGCTGCGACGACATGACCTTAAGTGGCCCAGTCAGGCTTTTTGTGCCTTACAAAAGGCGCA
AGAAGGAGAATGAACTGCCCACAACTCCCGTGAAGAAGGACTCCCCCAAGAACATCACATTGCTTCCAGC
CACCGCGGCTACCACCTTCACCGTGACCCCCTCGGGACAGATCACGACCTCGGGGGCACTGACCTTTGAC
CGAGCGTCCACGGTAGAGGCCACTGCTGTCATATCAGAGAGTCCGGCCCAGGGCGACGTCTTCGCAGGGG
CCACAGTCCAAGAGGCCAGCGTGCAGCCCCCATGCAGGGCCAGCCACCCTGAGCCTCACTACCCCGGCTA
TCAGGACAGCTGCCAGATCGCACCGTTTCCAGAAGCTGCGTTGCCAACGTCACATCCCAAAATAGTGTTG
ACATCCCTGCCTGCGCTGGCGGTCCCACCCCCGACTCCCACCAAAGCGGCACCTCCCGCGTTGGTCAATG
GGCTGGAGCTGTCAGAGCCGCGGAGCTGGCTGTACCTAGAAGAGATGGTCAACTCCTTGCTCAACACAGC
GCAGCAGCTGAAGACGCTGTTTGAGCAAGCCAAGCATGCCAGCACCTACCGAGAAGCTGCCACAAACCAG
GCCAAGATCCACGCTGACGCAGAGCGGAAGGAGCAGTCCTGCGTTAACTGCGGCCGGGAGGCTATGAGCG
AGTGCACCGGCTGCCACAAGGTCAACTACTGCTCCACCTTCTGCCAACGCAAGGACTGGAAGGATCACCA
GCACATATGCGGCCAGTCAGCAGCTGTCACCGTCCAGGCAGACGAAGTCCACGTGGCTGAAAGCGTGATG
GAGAAGGTGACCGTGTGA

Translation (565 aa):
MEDSDSAAKQLGLAEAAAVAAAAAVAAAAAAAAGGEAEEPVLSRDEDSEEDADSEAERETPRVTAVAVMA
AEPGHMDMGAEALPGPDEAAAAAAFAEVTTVTVANVGAAADNVFTTSVANAASISGHVLSGRTALQIGDS
LNTEKATLIVVHTDGSIVETTGLKGPAAPLTPGPQSPPTPLAPGQEKGGTKYNWDPSVYDSELPVRCRNI
SGTLYKNRLGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKRSIRYAGRPLQCLIQDGILNPHAASCT
CAACCDDMTLSGPVRLFVPYKRRKKENELPTTPVKKDSPKNITLLPATAATTFTVTPSGQITTSGALTFD
RASTVEATAVISESPAQGDVFAGATVQEASVQPPCRASHPEPHYPGYQDSCQIAPFPEAALPTSHPKIVL
TSLPALAVPPPTPTKAAPPALVNGLELSEPRSWLYLEEMVNSLLNTAQQLKTLFEQAKHASTYREAATNQ
AKIHADAERKEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTVQADEVHVAESVM
EKVTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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