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Report for CCDS90290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90290.1 Public Mus musculus 7 Pgap2 23 108 98 CCDS HistoryNCBI Gene:233575Re-query CCDS DB by CCDS ID:90290.1Re-query CCDS DB by GeneID:233575See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90290.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033292.13 ENSMUSP00000033292.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033292.13Link to Ensembl Protein Viewer:ENSMUSP00000033292.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033292Re-query CCDS DB by Protein ID:ENSMUSP00000033292
Current member NCBI NM_001374617.1 NP_001361546.1 Accepted alive Link to Nucleotide Sequence:NM_001374617.1Link to Protein Sequence:NP_001361546.1Re-query CCDS DB by Nucleotide ID:NM_001374617Re-query CCDS DB by Protein ID:NP_001361546Link to BLAST:NP_001361546.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001361546.1 254 Q3TQR0-1 254 100% 0 0

Chromosomal Locations for CCDS 90290.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102226281 102226445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102236094 102236346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102236448 102236554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102237122 102237230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102237401 102237531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGTACCAGGTCCCACTGACATTGGACCGGGATGGGACCCTAGTCCGGCTCCGCTTCACTATGGTGGCCC
TGATCACTGTCTGCTGTCCACTTGTCGCCTTCTTCTTCTGCATCCTGTGGTCCCTGCTCTTTCACTTCAA
GGAGACAACATCTACACACTGTGGGGTGCCCAATTACCTGCCATCAGTGAGCTCCGCCATTGGTGGGGAG
GTCCCCCAACGCTACGTGTGGCGTTTCTGCATTGGCCTGCACTCGGCACCCCGCTTCTTGACAGCCTTCG
CCTATTGGAACCACTACCTCAGCTGTGCGTCTCCATGTCCGGGTTACCGCCTTCTCTGCCGCATTAACTT
CAGTCTCAATGTGGTGGAGAACCTCGCGCTGCTCGTGCTCACCTACGTCTCCTCCTCCGAGGACTTCACC
ATCCACGAAAATGCTTTCATTGTGTTTATCGCGGCATCCCTCGGTTACATGCTCCTCACCTGCATTCTCT
GGCGGCTGACCAAGAAGCACACAGTAAGTCAGGAGGATCGCAAGTCCTACAGCTGGAAACAGCGGCTCTT
CGTCATCAACTTCATCTCCTTCTTCTCGGCGCTGGCTGTCTACTTCCGGCACAACATGTATTGTGAGGCT
GGAGTGTATACCATCTTTGCCATCCTGGAGTACACTGTTGTCCTAACCAACATGGCGTTCCACATGACAG
CCTGGTGGGACTTCGGGAACAAAGAGCTGCTAATAACCTCTCAGCCTGAGGAAAAGAGATTCTAA

Translation (254 aa):
MYQVPLTLDRDGTLVRLRFTMVALITVCCPLVAFFFCILWSLLFHFKETTSTHCGVPNYLPSVSSAIGGE
VPQRYVWRFCIGLHSAPRFLTAFAYWNHYLSCASPCPGYRLLCRINFSLNVVENLALLVLTYVSSSEDFT
IHENAFIVFIAASLGYMLLTCILWRLTKKHTVSQEDRKSYSWKQRLFVINFISFFSALAVYFRHNMYCEA
GVYTIFAILEYTVVLTNMAFHMTAWWDFGNKELLITSQPEEKRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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