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Report for CCDS88917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88917.1 Public Mus musculus 16 Rubcn 23 108 98 CCDS HistoryNCBI Gene:100502698Re-query CCDS DB by CCDS ID:88917.1Re-query CCDS DB by GeneID:100502698See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88917.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119810.1 ENSMUSP00000113087.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119810.1Link to Ensembl Protein Viewer:ENSMUSP00000113087.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119810Re-query CCDS DB by Protein ID:ENSMUSP00000113087
Current member NCBI NM_001374776.1 NP_001361705.1 Accepted alive Link to Nucleotide Sequence:NM_001374776.1Link to Protein Sequence:NP_001361705.1Re-query CCDS DB by Nucleotide ID:NM_001374776Re-query CCDS DB by Protein ID:NP_001361705Link to BLAST:NP_001361705.1

Chromosomal Locations for CCDS 88917.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 32823968 32824146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32824379 32824472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32825564 32825717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32826135 32826196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32826685 32826923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32827288 32827352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32827859 32828004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32828669 32828801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32829265 32829322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32835914 32836015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32836410 32836620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32838238 32838353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32842998 32843531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32844547 32844706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32847217 32847323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32847830 32847989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32849678 32849761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32856892 32856930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2643 nt):
ATGCAGAACATCCTGTATCATGGGCTCATCCATGACCAGGTGTGTTGCCGCCAGGCTGATTACTGGCAGT
TTGTGAAAGACATTCGGTGGCTCAGCCCGCACTCAGCCCTTCACGTGGAGAAGTTCATCAGTTTGCATGA
GAGCGACCAGAGCGACACTGACAGCGTGAGTGAGCGTGCTGTTGCAGAGCTGTGGCTGCAGCATAGCCTG
CAGTGCCACTGCCTCTCAGCCCAGCTCCGGCCTCTGCTCGGGGACAGACAGTACATCAGAAAATTCTACA
CAGAAACTGCCTTCCTGCTGAGTGACGCCCACGTCACAGCCATGCTCCAGTGCCTGGAAGCAGTGGAACA
GAACAACCCCCGTCTTCTGGCTCAGATCGATGCATCCATGTTTGCCAGAAAGCAGGAGAGCCCGCTGCTG
GTCACAAAGAGCCAGAGTCTGACCGCTCTGCCTGGTTCCACATACACCCCTCCAGCTAGCTATGCTCAGC
ATTCCTACTTTGGGTCCTCCTCCAGCCTTCAGTCTATGCCACAGTCCAGCCACAGCTCAGAGAGAAGATC
TACTTCCTTTTCACTCTCTGGCCCTTCCTGGCAACCTCAAGAAGACAGAGAATGCCTCTCACCAGCAGAG
ACTCAAACCACCCCAGCTCCGCTGCCTTCAGACTCTACTCTAGCCCAGGATTCCCCACTGACAGCACAGG
AGATGAGCGACAGCACTCTGACTAGCCCCCTAGAGGCATCCTGGGTCAGCAGCCAGAATGACTCCCCAAG
TGATGTCAGTGAGGGGCCCGAGTACCTGGCCATTGGCAACCCAGCCCCTCATGGCCGGACTGCCAGTTGT
GAGAGTCACAGCAGCAACGGCGAGAGCAGCAGCTCTCACTTGTTCTCCTCCAGCAGCTCTCAAAAGCTGG
AGTCTGCTGCCTCTTCTCTAGGGGACCAAGAGGAAGGCAGGCAGAGTCAGGCAGGCAGCGTCCTTCGCAG
GTCCAGCTTCTCAGAAGGGCAGACAGCCCCTGTCGCCAGCGGGACAAAGAAGAGCCATATTCGCTCCCAC
TCGGACACCAACATTGCCTCCAGAGGAGCCGCAGAGGGTGGTCAGTACCTCTGCTCAGGAGAAGGCATGT
TTAGAAGACCATCAGAAGGACAGTCCCTCATCAGTTACCTCTCTGAGCAAGACTTTGGCAGCTGTGCAGA
CCTGGAAAAGGAAAACGCCCACTTCAGCATCTCCGAGTCCTTGATTGCCGCCATTGAGCTGATGAAGTGC
AACATGATGAGCCAGTGTCTAGAAGAGGAGGAAGTAGAGGAGGAAGATAGTGACCGAGAGATCCAGGAAC
TGAAGCAGAAGATCCGCCTTCGGCGCCAGCAGATCCGCACCAAAAACCTGCTCCCTGCGTACCGGGAGAC
TGAGAATGGAAGCTTCCGGGTCACCTCCAGCAGCTCCCAGTTCAGTTCACGGGATTCGACGCAGCTCTCT
GAGTCCGGCTCTGCTGAGGATGCTGACGACTTGGAAATCCAAGACGCTGACATCCGGAGGAGTGCAGTCT
CAAACGGCAAATCATCCTTCTCCCAGAATCTCTCGCACTGCTTCCTGCACTCCACATCGGCTGAGGCAGT
GGCCATGGGGCTTCTGAAGCAGTTTGAGGGGATGCAGCTTCCAGCTGCCTCGGAGCTCGAGTGGCTAGTC
CCAGAGCATGATGCTCCACAGAAGCTCCTACCCATCCCCGACTCCCTGCCCATCTCACCAGATGACGGGC
AGCACGCGGACATCTACAAGCTGCGAATCCGCGTCCGTGGCAACCTGGAGTGGGCTCCGCCCCGGCCGCA
GATCATTTTTAATGTTCATCCAGCCCCCACGAGGAAGATTGCCGTGGCCAAGCAGAATTACCGCTGTGCG
GGATGTGGCATCCGGACGGACCCCGACTATATCAAGCGGCTGCGGTACTGTGAGTACCTAGGCAAGTACT
TCTGCCAGTGCTGCCACGAGAACGCCCAGATGGTCGTCCCCAGCCGCATTCTGCGCAAATGGGACTTCAG
CAAGTACTATGTCAGCAACTTCTCCAAGGACCTGCTCCTGAAGATCTGGAATGATCCTCTCTTCAATGTG
CAGGACATCAATAGCGCACTCTACAGGAAGGTCAAGCTGCTTAACCAAGTCCGGCTGCTGCGGGTTCAGC
TGTACCACATGAAGAACATGTTTAAGACATGCCGACTGGCCAAAGAGCTCCTGGATTCCTTTGACGTGGT
TCCAGGCCACCTGACAGAGGACCTCCATCTGTACTCGCTGAGTGACCTGACTGCAACCAAGAAGGGAGAA
CTGGGGCCCCGGCTGGCGGAGCTCACTAGAGCGGGAGCCGCCCACGTGGAGAGATGCATGCTGTGTCAGG
CCAAGGGCTTCATCTGTGAATTCTGTCAGAATGAGGAGGATGTCATCTTTCCTTTTGAGCTGCATAAGTG
CCGGACTTGTGAAGAGTGTAAAGCGTGTTACCATAAAACTTGCTTCAAGTCTGGACGCTGCCCCCGGTGT
GAGCGGCTGCAGGCCCGACGGGAGCTGCTGGCCAAGCAGAGCCTGGAGTCCTACCTGTCTGACTATGAGG
AGGAGCCCACAGAAGCCTTGGCTCTAGAGGCCACCGTCCTAGAGACCACCTGA

Translation (880 aa):
MQNILYHGLIHDQVCCRQADYWQFVKDIRWLSPHSALHVEKFISLHESDQSDTDSVSERAVAELWLQHSL
QCHCLSAQLRPLLGDRQYIRKFYTETAFLLSDAHVTAMLQCLEAVEQNNPRLLAQIDASMFARKQESPLL
VTKSQSLTALPGSTYTPPASYAQHSYFGSSSSLQSMPQSSHSSERRSTSFSLSGPSWQPQEDRECLSPAE
TQTTPAPLPSDSTLAQDSPLTAQEMSDSTLTSPLEASWVSSQNDSPSDVSEGPEYLAIGNPAPHGRTASC
ESHSSNGESSSSHLFSSSSSQKLESAASSLGDQEEGRQSQAGSVLRRSSFSEGQTAPVASGTKKSHIRSH
SDTNIASRGAAEGGQYLCSGEGMFRRPSEGQSLISYLSEQDFGSCADLEKENAHFSISESLIAAIELMKC
NMMSQCLEEEEVEEEDSDREIQELKQKIRLRRQQIRTKNLLPAYRETENGSFRVTSSSSQFSSRDSTQLS
ESGSAEDADDLEIQDADIRRSAVSNGKSSFSQNLSHCFLHSTSAEAVAMGLLKQFEGMQLPAASELEWLV
PEHDAPQKLLPIPDSLPISPDDGQHADIYKLRIRVRGNLEWAPPRPQIIFNVHPAPTRKIAVAKQNYRCA
GCGIRTDPDYIKRLRYCEYLGKYFCQCCHENAQMVVPSRILRKWDFSKYYVSNFSKDLLLKIWNDPLFNV
QDINSALYRKVKLLNQVRLLRVQLYHMKNMFKTCRLAKELLDSFDVVPGHLTEDLHLYSLSDLTATKKGE
LGPRLAELTRAGAAHVERCMLCQAKGFICEFCQNEEDVIFPFELHKCRTCEECKACYHKTCFKSGRCPRC
ERLQARRELLAKQSLESYLSDYEEEPTEALALEATVLETT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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