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Report for CCDS94443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94443.1 Public Homo sapiens 9 ERCC6L2 24 110 108 CCDS HistoryNCBI Gene:375748Re-query CCDS DB by CCDS ID:94443.1Re-query CCDS DB by GeneID:375748See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 94443.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000653738.2 ENSP00000499221.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000653738.2Link to Ensembl Protein Viewer:ENSP00000499221.2Re-query CCDS DB by Nucleotide ID:ENST00000653738Re-query CCDS DB by Protein ID:ENSP00000499221
Original member Current member EBI ENST00000682983.1 ENSP00000507518.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000682983.1Link to Ensembl Protein Viewer:ENSP00000507518.1Re-query CCDS DB by Nucleotide ID:ENST00000682983Re-query CCDS DB by Protein ID:ENSP00000507518
Original member Current member NCBI NM_020207.7 NP_064592.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020207.7Link to Protein Sequence:NP_064592.3Re-query CCDS DB by Nucleotide ID:NM_020207Re-query CCDS DB by Protein ID:NP_064592Link to BLAST:NP_064592.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064592.3 1550 Q5T890-1 1550 100% 0 0

Chromosomal Locations for CCDS 94443.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 95876039 95876084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95880869 95881293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95897849 95897971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95907078 95907271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95915668 95915829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95916227 95916434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95921175 95921315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95922305 95922418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95923260 95923379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95928079 95928150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95928719 95928864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95941454 95941549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95955914 95956013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95966562 95966714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95970576 95970656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95971933 95973088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95978061 95978215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96004520 96004701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96012225 96013203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4653 nt):
ATGGATCCGTCGGCGCCACAGCCCCGCGCGGAAACCTCAGGCAAAGACATATGGCATCCAGGAGAAAGAT
GTCTTGCCCCTTCTCCAGATAATGGAAAACTTTGTGAAGCAAGCATAAAATCTATCACAGTGGATGAAAA
TGGCAAGTCATTTGCAGTCGTCTTATATGCAGATTTTCAAGAAAGGAAAATACCTCTTAAACAGCTTCAA
GAAGTGAAATTTGTTAAAGATTGCCCTAGGAATCTTATATTTGATGATGAAGATTTAGAAAAACCTTATT
TCCCAAACCGAAAATTTCCATCATCTTCTGTTGCTTTTAAATTATCTGACAATGGAGACTCTATTCCTTA
TACCATCAATAGGTATTTGAGAGACTACCAAAGAGAAGGAACCCGGTTTCTTTATGGACACTACATCCAT
GGAGGAGGGTGCATTCTGGGTGATGACATGGGACTTGGAAAAACAGTACAGGTTATTTCATTTCTGGCTG
CAGTTTTGCATAAAAAGGGAACTCGTGAGGATATTGAAAATAACATGCCAGAGTTTTTACTAAGAAGTAT
GAAAAAGGAACCCCTTTCTTCTACAGCAAAAAAGATGTTCTTAATAGTTGCTCCTCTTTCTGTCCTCTAC
AACTGGAAGGATGAATTGGACACCTGGGGATATTTCAGAGTCACTGTTTTACATGGAAACAGAAAAGATA
ATGAATTAATTCGTGTAAAGCAGAGGAAATGTGAAATTGCTCTAACAACTTATGAAACACTACGCTTATG
CCTGGATGAACTTAACAGTTTGGAATGGTCAGCTGTCATTGTGGATGAAGCTCATAGAATCAAGAATCCA
AAAGCTAGAGTAACAGAAGTTATGAAAGCTTTGAAATGTAATGTCCGCATTGGCCTCACTGGAACCATCC
TTCAGAACAACATGAAGGAACTGTGGTGTGTTATGGACTGGGCTGTGCCAGGCCTTTTAGGGAGTGGGAC
CTACTTCAAGAAGCAGTTTTCTGACCCAGTAGAACATGGTCAGAGACACACGGCAACAAAGAGAGAACTA
GCCACTGGCCGAAAGGCCATGCAAAGACTTGCCAAAAAGATGTCTGGCTGGTTTCTCAGGCGCACCAAGA
CTCTTATCAAGGATCAGTTGCCTAAGAAGGAAGACCGGATGGTGTATTGTTCTTTGACAGATTTCCAGAA
AGCTGTCTATCAAACAGTGTTAGAAACAGAGGACGTGACTTTGATACTTCAATCTTCTGAGCCTTGTACC
TGTAGGAGTGGCCAAAAAAGGAGAAATTGTTGTTATAAGACCAATTCTCATGGTGAAACAGTGAAAACCT
TGTATCTCAGTTACCTTACAGTCCTTCAGAAGGTAGCTAACCATGTCGCGCTACTGCAAGCTGCTAGTAC
TTCCAAACAACAGGAAACACTTATCAAAAGGATATGTGATCAGGTATTTTCCAGATTCCCAGATTTTGTG
CAGAAAAGCAAAGATGCAGCCTTTGAAACACTTTCTGACCCTAAATACAGTGGAAAAATGAAGGTCCTTC
AGCAGCTTTTAAATCATTGCAGGAAAAACAGAGATAAAGTTCTTCTCTTTTCTTTTTCCACCAAGTTGCT
TGACGTGCTACAGCAGTACTGTATGGCGTCTGGGCTTGATTACCGACGACTTGATGGAAGTACAAAATCA
GAGGAAAGACTCAAGATTGTAAAAGAGTTCAACAGTACACAAGATGTTAACATTTGCCTTGTCTCTACAA
TGGCTGGTGGACTAGGCCTCAATTTTGTCGGTGCCAATGTTGTTGTATTATTTGATCCTACTTGGAATCC
AGCCAATGATCTTCAAGCCATTGACAGAGCATATAGGATTGGACAATGTAGAGATGTCAAAGTGCTTAGG
CTGATATCCTTGGGAACTGTGGAGGAAATCATGTATTTACGACAGATATACAAGCAGCAACTTCACTGTG
TGGTGGTTGGAAGTGAAAATGCCAAACGATATTTTGAAGCAGTTCAAGGATCTAAAGAGCATCAAGGAGA
GCTTTTTGGGATCCATAACCTCTTCAAATTTAGGTCCCAAGGGTCTTGTCTTACGAAGGACATCCTGGAG
AGAGAAGGCCAAGTAGAAGCAGGGATCATGACAGCCACAACATGGTTGAAAGAGGGACCTCCAGCACACA
AACTGGAAATGCCTAGACAGCCTGACTGTCAGGAATGCAGAGGTACAGAACAAGCTGCAGAGCCACTGGC
AAAGGAAGCATGTGATCTCTGCAGTGACTTCAGTGATGAAGAGCCAGTGGGAGCCACAGGAATAAAGACT
GCCAAAAACAAAGCACCCGATTCAAGTAAAGCTTCCAGCTCTCCAGGACAGCTTACCTTACTCCAGTGTG
GTTTCTCGAAATTGCTTGAAACAAAATGTAAAGCAGTTGAGGATAGTGATGGAAATACTGCCTCTGATGA
TGAAAGTTCTGATGAGCAGCCCACATGCCTTTCAACAGAAGCCAAAGATGCTGGTTGTGAGAAAAATCAG
GACTCTCTTGGTACTTCAAAACATCAGAAATTAGATAACATCCTAAATCCAAAAGAAAAGCATATTTTTT
ATAAAAGTGAGAAGATTTTAGAACAGAATATTTCTTCCAAGTCTGACGAGAAAAAAATTAAAAATACAGA
TAAACATTGCATTTTACAGAATGTCACAGAATCAGAAGATAGTGATGTCATCTGTCCTACACAATACACA
ACTGAGAGATTCCCCGACAATAGTATAAGGTTTAAGCCACCCTTGGAAGGATCTGAGGATTCTGAAACAG
AACACACTGTAAAAACAAGAAATAATGATAATAGTCGAAACACTGATGACAAAAGAAATGGAATAATTTC
AAAAAAGTTAAGTCCTGAGAACACAACCCTGAAATCTATTTTGAAAAGAAAAGGCACCAGTGATATCAGT
GATGAATCTGATGACATTGAAATTTCTTCCAAGTCAAGAGTAAGAAAGAGAGCTAGTTCATTGAGGTTTA
AGAGAATAAAAGAAACCAAAAAAGAACTTCACAATTCTCCCAAAACAATGAACAAAACAAACCAAGTGTA
TGCAGCAAATGAGGATCATAACTCTCAGTTTATTGATGATTATTCATCCTCAGATGAGAGTTTATCCGTC
AGCCACTTCAGTTTCTCTAAACAGAGCCACAGACCAAGAACTATAAGAGACAGAACTAGTTTTTCTTCAA
AATTGCCTAGCCATAATAAGAAAAATAGCACTTTTATTCCAAGAAAACCAATGAAATGTTCAAATGAGAA
AGTTGTTAATCAAGAGCAGTCGTATGAATCAATGGATAAATTTTTAGATGGCGTTCAGGAAGTGGCTTAT
ATTCACTCAAACCAGAATGTAATTGGATCGAGCAAAGCTGAAAATCACATGAGCCGATGGGCAGCACATG
ACGTATTTGAGTTGAAGCAGTTTTCTCAGCTGCCTGCTAACATAGCTGTTTGCAGTTCTAAGACATATAA
AGAAAAAGTGGATGCAGATACATTGCCACACACAAAGAAAGGCCAGCAACCGAGTGAAGGCAGCATTTCA
CTTCCTCTTTACATTTCAAATCCTGTAAACCAGAAGAAGAAAAAAGTCTACCATACAAACCAGACCACCT
TCATAATTGGAGAAACACCAAAAGGAATCCGCAGAAAACAATTTGAAGAAATGGCCTCTTATTTTAACTC
GTCTTCTGTAAACGAATTTGCTAAACATATAACCAATGCCACATCAGAAGAACGACAGAAAATGCTAAGA
GACTTTTATGCTTCTCAATATCCAGAGGTAAAAGAATTTTTTGTGGATTCTGTGTCACAATTCAACAATT
CTTCCTTTGAGAAAGGAGAGCAGCGCACCCGGAAGAAATCTGATAAAAGAGAATCTCTTATAAAACCAAG
GCTGTCAGATTCTGAAACCTTGTCATTTAAAGATTCTACCAACAAAATTTCTCAAGTTTGCAGCCTAAAA
ACATATAAAAGAAAATCAGTTAAGTTTCAGAATCATATTTCCTATAGAGAAGAGGTGTTTTTTAATGATG
CAGAAACTAAGAAATCACCTGTTAGTTCTACTCAAGAGATTGACAGTGGGAAAAACAGCCAGGCATCCGA
AGATACTGTGACATCCCGTTCTCTGAACAGTGAGTCTGAAACACGTGAGAGAAGGTTAGAAAATACCATG
AAAGACCAACAGGACCTCACAAGAACGGGCATTTCAAGAAAAGAACCCCTTCTCAAATTGGAAAACAAAA
AGATAGAAAATCCAGTGCTGGAAAATACTTCTGTGATAAGCTTACTTGGTGATACCTCTATTCTTGATGA
CCTTTTTAAAAGTCATGGGAACAGTCCCACACAACTGCCAAAGAAAGTTCTTTCAGGGCCCATGGAAAAA
GCAAAACAGAGACCAAAAGATTTCTGGGACATCTTGAATGAGCAGAATGATGAGAGTCTTAGTAAACTCA
CAGACTTGGCAGTAATAGAGACTCTGTGTGAAAAAGCACCTCTAGCAGCACCCTTTAAAAGGAGAGAAGA
GCCAGCAACTTCTCTTTGGAAATCAAATGAGAAATTTTTATGGAAGAAATTTAGCCCAAGTGATACAGAT
GAAAACGCAACCAATACACAGAGTACCACATAA

Translation (1550 aa):
MDPSAPQPRAETSGKDIWHPGERCLAPSPDNGKLCEASIKSITVDENGKSFAVVLYADFQERKIPLKQLQ
EVKFVKDCPRNLIFDDEDLEKPYFPNRKFPSSSVAFKLSDNGDSIPYTINRYLRDYQREGTRFLYGHYIH
GGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLY
NWKDELDTWGYFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNP
KARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKREL
ATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLILQSSEPCT
CRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQQETLIKRICDQVFSRFPDFV
QKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKS
EERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLR
LISLGTVEEIMYLRQIYKQQLHCVVVGSENAKRYFEAVQGSKEHQGELFGIHNLFKFRSQGSCLTKDILE
REGQVEAGIMTATTWLKEGPPAHKLEMPRQPDCQECRGTEQAAEPLAKEACDLCSDFSDEEPVGATGIKT
AKNKAPDSSKASSSPGQLTLLQCGFSKLLETKCKAVEDSDGNTASDDESSDEQPTCLSTEAKDAGCEKNQ
DSLGTSKHQKLDNILNPKEKHIFYKSEKILEQNISSKSDEKKIKNTDKHCILQNVTESEDSDVICPTQYT
TERFPDNSIRFKPPLEGSEDSETEHTVKTRNNDNSRNTDDKRNGIISKKLSPENTTLKSILKRKGTSDIS
DESDDIEISSKSRVRKRASSLRFKRIKETKKELHNSPKTMNKTNQVYAANEDHNSQFIDDYSSSDESLSV
SHFSFSKQSHRPRTIRDRTSFSSKLPSHNKKNSTFIPRKPMKCSNEKVVNQEQSYESMDKFLDGVQEVAY
IHSNQNVIGSSKAENHMSRWAAHDVFELKQFSQLPANIAVCSSKTYKEKVDADTLPHTKKGQQPSEGSIS
LPLYISNPVNQKKKKVYHTNQTTFIIGETPKGIRRKQFEEMASYFNSSSVNEFAKHITNATSEERQKMLR
DFYASQYPEVKEFFVDSVSQFNNSSFEKGEQRTRKKSDKRESLIKPRLSDSETLSFKDSTNKISQVCSLK
TYKRKSVKFQNHISYREEVFFNDAETKKSPVSSTQEIDSGKNSQASEDTVTSRSLNSESETRERRLENTM
KDQQDLTRTGISRKEPLLKLENKKIENPVLENTSVISLLGDTSILDDLFKSHGNSPTQLPKKVLSGPMEK
AKQRPKDFWDILNEQNDESLSKLTDLAVIETLCEKAPLAAPFKRREEPATSLWKSNEKFLWKKFSPSDTD
ENATNTQSTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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