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Report for CCDS15514.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15514.1 Public Mus musculus 1 Slamf9 23 108 98 CCDS HistoryNCBI Gene:98365Re-query CCDS DB by CCDS ID:15514.1Re-query CCDS DB by GeneID:98365See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15514.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027830.4 ENSMUSP00000027830.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027830.4Link to Ensembl Protein Viewer:ENSMUSP00000027830.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027830Re-query CCDS DB by Protein ID:ENSMUSP00000027830
Original member Current member NCBI NM_029612.4 NP_083888.3 Accepted alive Link to Nucleotide Sequence:NM_029612.4Link to Protein Sequence:NP_083888.3Re-query CCDS DB by Nucleotide ID:NM_029612Re-query CCDS DB by Protein ID:NP_083888Link to BLAST:NP_083888.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083888.3 285 Q9D780 285 98.9474% 0 3

Chromosomal Locations for CCDS 15514.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172475497 172475539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172476133 172476474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172477206 172477478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172478060 172478259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGGGGCCCTTCTGTGGTCACTCCTGCTGCTGCTTCAGGAAGCCAAAGGGTTTTCTGGAGATGATGAGG
ATCCTGAGGAAGTGGTTGGTGTCCTGCAAGAGTCTATCAACCTCTCTCTGGAAATACCATCCAATGAAGA
AATTAAGCACATAGACTGGCTCTTTCAAAACAACATTGCCATCGTGAAGCCAGGCAAAAAGGGACAGCCA
GCCGTTATCATGGCAGTGGATCCTCGATACCGGGGCAGAGTGAGCATCTCTGAGTCCAGCTACTCCCTGC
ATATTAGCAATCTGACCTGGGAAGACTCAGGGCTTTACAACGCCCAAGTCAACTTGAAGACATCTGAGTC
CCACATCACGAAGTCTTACCATCTCCGTGTCTACCGGAGGCTGTCAAAGCCCCACATCACTGTGAACTCT
AACATCTCAGAGGAAGGTGTCTGTAATATATCTCTGACGTGCTCCATAGAGAGAGCAGGCATGGACGTGA
CCTACATCTGGCTTTCATCACAGGACAGCACTAACACATCCCATGAAGGCTCTGTCCTCAGTACATCCTG
GAGGCCTGGTGACAAAGCTCCTTCCTATACTTGCAGGGTCAGCAACCCCATCAGCAACATCAGTTCCCGT
CGCATCTCTGTTGGGTCCTTCTGTGCAGATCCTGGATATCTGGAGAAGCCTTCAATGCTCTGCTTACTGG
TTAAGAGCTTGTTCCTTCTCCTACTCTTGGCAATTCTAACTGTGGGACTCTGCCTCTTCCGAGCCCAGAA
AAGCTATGAGACGCCAAGGGTGAGGAAACTCAAGAGAAACCGCATCAAACTGAGGAAGAAGGGGAAGTCT
GGCCCTACTCCCGTCTGA

Translation (285 aa):
MGALLWSLLLLLQEAKGFSGDDEDPEEVVGVLQESINLSLEIPSNEEIKHIDWLFQNNIAIVKPGKKGQP
AVIMAVDPRYRGRVSISESSYSLHISNLTWEDSGLYNAQVNLKTSESHITKSYHLRVYRRLSKPHITVNS
NISEEGVCNISLTCSIERAGMDVTYIWLSSQDSTNTSHEGSVLSTSWRPGDKAPSYTCRVSNPISNISSR
RISVGSFCADPGYLEKPSMLCLLVKSLFLLLLLAILTVGLCLFRAQKSYETPRVRKLKRNRIKLRKKGKS
GPTPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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