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Report for CCDS28674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28674.1 Public Mus musculus 17 Msh5 23 108 98 CCDS HistoryNCBI Gene:17687Re-query CCDS DB by CCDS ID:28674.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28674.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007250.13 ENSMUSP00000007250.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007250.13Link to Ensembl Protein Viewer:ENSMUSP00000007250.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000007250Re-query CCDS DB by Protein ID:ENSMUSP00000007250
Original member Current member EBI ENSMUST00000097338.10 ENSMUSP00000094951.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097338.10Link to Ensembl Protein Viewer:ENSMUSP00000094951.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000097338Re-query CCDS DB by Protein ID:ENSMUSP00000094951
Original member Current member NCBI NM_001146215.2 NP_001139687.1 Accepted alive Link to Nucleotide Sequence:NM_001146215.2Link to Protein Sequence:NP_001139687.1Re-query CCDS DB by Nucleotide ID:NM_001146215Re-query CCDS DB by Protein ID:NP_001139687Link to BLAST:NP_001139687.1
Original member Current member NCBI NM_013600.3 NP_038628.2 Accepted alive Link to Nucleotide Sequence:NM_013600.3Link to Protein Sequence:NP_038628.2Re-query CCDS DB by Nucleotide ID:NM_013600Re-query CCDS DB by Protein ID:NP_038628Link to BLAST:NP_038628.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139687.1 833 Q9QUM7 833 99.88% 0 1
NP_038628.2 833 Q9QUM7 833 99.88% 0 1

Chromosomal Locations for CCDS 28674.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35028741 35028852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35029196 35029269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35029653 35029790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35029878 35030021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35030201 35030275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35030609 35030758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35031148 35031274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35031354 35031543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35031679 35031766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35032341 35032421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35032760 35032869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35033223 35033295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35033590 35033718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35038406 35038468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35039201 35039339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35041470 35041515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35042098 35042180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35043729 35043764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35044025 35044134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35044317 35044438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35045114 35045176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35045294 35045374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35045930 35046053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35046231 35046374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2502 nt):
ATGGCTTTCAGAGCGACCCCAGGCCGGACGCCGCCGGGACCCGGACCCAGATCCGGAATCCCCTCAGCCA
GCTTCCCCAGCCCTCAGCCCCCAATGGCGGGGCCTGGAGGTATCGAGGAAGAGGACGAGGAGGAGCCCGC
CGAGATCCATCTGTGCGTGCTGTGGAGCTCGGGATACCTGGGCATTGCTTACTATGACACTAGTGACTCC
ACTATCCACTTCATGCCAGATGCCCCAGACCACGAGAGCCTAAAGCTTCTCCAGAGAGTTCTGGATGAAA
TCAACCCCCAGTCTGTTGTCACAAGTGCCAAACAGGATGAGGCTATGACTCGATTTCTAGGGAAGCTTGC
CTCCGAGGAGCACAGAGAGCCAAAGGGACCTGAAATCATACTTCTGCCAAGCGTGGATTTTGGTCCAGAG
ATAAGCAAACAGCGTCTCCTTTCCGGAAACTACTCCTTCATCTCAGACTCCATGACTGCTACTGAGAAAA
TCCTTTTCCTCTCCTCCATTATTCCCTTTGACTGTGTCCTCACGGTCCGGGCACTTGGAGGACTGCTCAA
GTTCCTGAGTCGAAGAAGAATTGGGGTTGAACTGGAAGACTATGATGTTGGCGTCCCTATCCTGGGATTC
AAGAAGTTTGTATTGACCCATCTGGTGAGCATAGATCAAGACACTTACAGCGTTCTACAGATTTTCAAGA
GTGAGTCTCACCCCTCGGTGTACAAAGTAGCCAGTGGGCTGAAGGAGGGGCTCAGCCTTTTTGGAATCCT
CAACAGATGCCGCTGTAAGTGGGGACAGAAGCTGCTCAGGCTGTGGTTTACACGTCCAACCCGGGAGCTA
AGGGAACTCAATTCCCGACTGGATGTCATTCAGTTCTTCCTGATGCCTCAGAACCTGGACATGGCCCAGA
TGCTGCACCGACTCCTGAGCCACATCAAGAATGTGCCTCTGATTCTGAAACGCATGAAGTTGTCCCACAC
CAAGGTCAGTGACTGGCAGGTCCTCTACAAGACTGTGTACAGTGCTCTCGGCCTGAGGGATGCCTGCCGT
TCTCTGCCACAGTCCATCCAGCTTTTTCAGGACATTGCCCAGGAGTTCTCTGACGACCTGCATCACATTG
CCAGCCTCATCGGGAAGGTGGTGGACTTTGAGGAAAGTCTTGCTGAAAATCGCTTCACAGTCCTCCCTAA
CATAGACCCTGACATAGATGCCAAGAAGCGAAGGCTGATAGGGCTTCCGAGCTTCCTCACTGAAGTTGCT
CAGAAGGAGCTGGAGAACCTGGACTCTCGCATCCCCTCATGCAGTGTCATCTACATCCCTCTGATTGGCT
TCCTTCTTTCCATTCCCCGCTTGCCTTTCATGGTGGAAGCTAGTGACTTTGAGATTGAGGGGCTGGACTT
CATGTTTCTCTCAGAGGACAAGCTGCACTATCGTAGCGCCCGGACCAAGGAGCTGGACACGCTGCTGGGA
GACCTGCACTGCGAGATCCGGGACCAGGAGACCCTGTTGATGTACCAGCTGCAGTGCCAGGTGCTGGCAC
GGGCTTCGGTCTTGACTCGGGTATTGGACCTTGCCTCCCGCCTGGACGTCCTGTTGGCTCTTGCCAGTGC
TGCCCGGGACTACGGCTATTCGAGACCGCATTACTCTCCCTGTATCCATGGAGTACGAATCAGGAATGGC
AGGCATCCTCTGATGGAACTGTGTGCACGAACCTTCGTGCCCAACTCCACGGACTGTGGTGGGGACCAGG
GCAGGGTCAAAGTCATCACTGGGCCCAACTCCTCAGGGAAAAGCATATATCTCAAGCAGGTAGGCTTGAT
CACTTTCATGGCCCTGGTGGGCAGTTTCGTGCCTGCAGAGGAGGCCGAGATTGGGGTAATCGACGCCATC
TTCACTCGAATTCACAGCTGCGAATCCATCTCCCTCGGCCTCTCCACCTTCATGATTGATCTCAACCAGG
TGGCGAAAGCAGTGAACAATGCCACAGAGCACTCGCTGGTCCTGATCGATGAATTCGGGAAGGGGACCAA
CTCGGTGGATGGCCTGGCACTTCTGGCTGCTGTGCTCCGTCACTGGCTAGCACTGGGACCCAGCTGCCCC
CACGTCTTTGTAGCCACCAACTTCCTGAGCCTTGTTCAGCTGCAGCTGCTGCCGCAAGGACCCCTGGTGC
AGTATTTGACCATGGAGACTTGTGAGGATGGGGAAGACCTTGTCTTCTTCTACCAGCTTTGCCAAGGCGT
CGCCAGTGCCAGCCACGCCTCCCACACAGCGGCCCAGGCTGGGCTTCCTGACCCACTCATTGCTCGTGGC
AAAGAGGTCTCAGACTTGATCCGCAGTGGGAAACCCATCAAGGCCACGAATGAGCTTCTGAGGAGGAACC
AAATGGAAAACTGCCAGGCACTGGTGGATACGTTTCTAAAACTGGACTTGGAGGATCCCACCCTGGACCT
GGACATTTTCATTAGTCAGGAAGTGCTGCCCGCTGCTCCCACCATCCTCTGA

Translation (833 aa):
MAFRATPGRTPPGPGPRSGIPSASFPSPQPPMAGPGGIEEEDEEEPAEIHLCVLWSSGYLGIAYYDTSDS
TIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDEAMTRFLGKLASEEHREPKGPEIILLPSVDFGPE
ISKQRLLSGNYSFISDSMTATEKILFLSSIIPFDCVLTVRALGGLLKFLSRRRIGVELEDYDVGVPILGF
KKFVLTHLVSIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCRCKWGQKLLRLWFTRPTREL
RELNSRLDVIQFFLMPQNLDMAQMLHRLLSHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACR
SLPQSIQLFQDIAQEFSDDLHHIASLIGKVVDFEESLAENRFTVLPNIDPDIDAKKRRLIGLPSFLTEVA
QKELENLDSRIPSCSVIYIPLIGFLLSIPRLPFMVEASDFEIEGLDFMFLSEDKLHYRSARTKELDTLLG
DLHCEIRDQETLLMYQLQCQVLARASVLTRVLDLASRLDVLLALASAARDYGYSRPHYSPCIHGVRIRNG
RHPLMELCARTFVPNSTDCGGDQGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGVIDAI
FTRIHSCESISLGLSTFMIDLNQVAKAVNNATEHSLVLIDEFGKGTNSVDGLALLAAVLRHWLALGPSCP
HVFVATNFLSLVQLQLLPQGPLVQYLTMETCEDGEDLVFFYQLCQGVASASHASHTAAQAGLPDPLIARG
KEVSDLIRSGKPIKATNELLRRNQMENCQALVDTFLKLDLEDPTLDLDIFISQEVLPAAPTIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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