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Report for CCDS19591.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19591.1 Public Mus musculus 5 Msi1 23 108 98 CCDS HistoryNCBI Gene:17690Re-query CCDS DB by CCDS ID:19591.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19591.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000150779.7 ENSMUSP00000120516.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150779.7Link to Ensembl Protein Viewer:ENSMUSP00000120516.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150779Re-query CCDS DB by Protein ID:ENSMUSP00000120516
Original member NCBI NM_008629.1 NP_032655.1 Updated not alive Link to Nucleotide Sequence:NM_008629.1Link to Protein Sequence:NP_032655.1Re-query CCDS DB by Nucleotide ID:NM_008629Re-query CCDS DB by Protein ID:NP_032655
Current member NCBI NM_008629.2 NP_032655.1 Accepted alive Link to Nucleotide Sequence:NM_008629.2Link to Protein Sequence:NP_032655.1Re-query CCDS DB by Nucleotide ID:NM_008629Re-query CCDS DB by Protein ID:NP_032655Link to BLAST:NP_032655.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032655.1 362 Q61474-1 362 100% 0 0

Chromosomal Locations for CCDS 19591.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115429748 115429806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115429977 115430017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115430623 115430704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115430804 115430888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115433852 115433893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115435454 115435546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115438713 115438761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115440485 115440567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115441328 115441445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115445395 115445475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115447130 115447186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115450215 115450283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115450787 115450974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115451457 115451498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGGAGACTGACGCGCCCCAGCCCGGCCTCGCCTCCCCGGACTCGCCGCACGACCCCTGCAAGATGTTCA
TCGGAGGACTCAGTTGGCAGACCACGCAGGAAGGGCTGCGCGAATACTTCGGCCAGTTCGGGGAGGTGAA
AGAGTGTCTGGTGATGCGGGACCCCCTGACCAAAAGATCCAGGGGTTTCGGCTTCGTCACTTTCATGGAC
CAGGCGGGGGTGGATAAAGTGCTGGCGCAATCGCGGCACGAGCTCGACTCCAAAACAATTGACCCCAAGG
TGGCCTTTCCTCGAAGAGCACAGCCTAAGATGGTCACTCGGACGAAGAAGATCTTCGTGGGGGGGCTGTC
TGTGAACACCACGGTGGAAGATGTGAAACACTATTTCGAGCAGTTCGGAAAGGTGGATGATGCCATGCTG
ATGTTCGACAAAACCACCAACAGGCACAGAGGGTTTGGATTTGTCACGTTTGAGAGCGAGGACATCGTAG
AGAAAGTTTGTGAGATCCACTTCCATGAAATCAACAACAAAATGGTGGAATGCAAGAAAGCCCAGCCAAA
GGAGGTGATGTCCCCGACAGGCTCAGCCCGGGGCAGGTCTCGGGTCATGCCCTACGGAATGGATGCCTTC
ATGCTGGGTATTGGGATGCTGGGTTACCCAGGGTTCCAAGCCACGACCTACGCCAGCCGGAGTTACACAG
GCCTTGCCCCTGGTTACACCTACCAGTTCCCCGAATTCCGTGTAGAGCGGAGCCCTCTCCCGAGCGCCCC
AGTCCTCCCCGAGCTCACAGCTATCCCTCTCACGGCTTATGGGCCCATGGCGGCGGCAGCGGCGGCGGCA
GCTGTAGTTCGAGGGACAGGCTCTCACCCCTGGACGATGGCTCCCCCTCCAGGTTCCACTCCCAGCCGCA
CAGGGGGCTTCCTAGGGACCACAAGCCCCGGCCCCATGGCTGAGCTCTACGGGGCAGCCAACCAGGACTC
CGGGGTCAGCAGTTACATCAGCGCCGCCAGCCCCGCCCCCAGCACTGGTTTCGGCCACAGTCTTGGGGGT
CCCTTGATTGCCACAGCCTTCACCAATGGGTACCACTGA

Translation (362 aa):
METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD
QAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAML
MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAF
MLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEFRVERSPLPSAPVLPELTAIPLTAYGPMAAAAAAA
AVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGG
PLIATAFTNGYH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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