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Report for CCDS2934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2934.1 Public Homo sapiens 3 COL8A1 24 110 108 CCDS HistoryNCBI Gene:1295Re-query CCDS DB by CCDS ID:2934.1Re-query CCDS DB by GeneID:1295See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2934.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261037.7 ENSP00000261037.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000261037.7Link to Ensembl Protein Viewer:ENSP00000261037.3Re-query CCDS DB by Nucleotide ID:ENST00000261037Re-query CCDS DB by Protein ID:ENSP00000261037
Original member Current member EBI ENST00000273342.8 ENSP00000273342.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000273342.8Link to Ensembl Protein Viewer:ENSP00000273342.3Re-query CCDS DB by Nucleotide ID:ENST00000273342Re-query CCDS DB by Protein ID:ENSP00000273342
Original member Current member EBI ENST00000652472.1 ENSP00000498483.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000652472.1Link to Ensembl Protein Viewer:ENSP00000498483.1Re-query CCDS DB by Nucleotide ID:ENST00000652472Re-query CCDS DB by Protein ID:ENSP00000498483
Original member Current member NCBI NM_001850.5 NP_001841.2 Accepted alive Link to Nucleotide Sequence:NM_001850.5Link to Protein Sequence:NP_001841.2Re-query CCDS DB by Nucleotide ID:NM_001850Re-query CCDS DB by Protein ID:NP_001841Link to BLAST:NP_001841.2
Original member Current member NCBI NM_020351.4 NP_065084.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020351.4Link to Protein Sequence:NP_065084.2Re-query CCDS DB by Nucleotide ID:NM_020351Re-query CCDS DB by Protein ID:NP_065084Link to BLAST:NP_065084.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001841.2 744 P27658 744 100% 0 0
NP_065084.2 744 P27658 744 100% 0 0

Chromosomal Locations for CCDS 2934.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 99790683 99791010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 99794230 99796136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2235 nt):
ATGGCTGTGCTGCCTGGCCCTCTGCAGCTGCTGGGAGTGCTGCTTACCATTTCCCTGAGTTCCATCAGGC
TCATTCAGGCTGGTGCCTACTATGGGATCAAGCCGCTGCCACCTCAAATTCCTCCTCAGATGCCACCACA
AATTCCACAATACCAGCCCCTGGGTCAGCAAGTACCTCACATGCCTTTGGCCAAAGATGGCCTTGCCATG
GGCAAGGAGATGCCCCACTTGCAGTATGGCAAAGAGTATCCACACCTACCCCAATATATGAAGGAAATTC
AACCGGCGCCAAGAATGGGCAAGGAAGCCGTACCCAAGAAAGGCAAAGAAATACCATTAGCCAGTTTACG
AGGGGAACAAGGTCCCCGTGGAGAGCCTGGCCCAAGAGGACCACCTGGGCCCCCTGGTTTGCCAGGTCAT
GGGATACCTGGAATTAAAGGAAAACCAGGGCCACAGGGATATCCAGGAGTTGGAAAGCCAGGTATGCCTG
GAATGCCAGGGAAGCCAGGAGCCATGGGCATGCCTGGGGCAAAAGGAGAAATTGGACAGAAAGGGGAAAT
TGGGCCTATGGGGATCCCAGGACCACAAGGACCTCCAGGGCCTCATGGACTTCCTGGCATTGGGAAGCCA
GGTGGGCCAGGGTTACCAGGGCAACCAGGACCAAAGGGTGATCGAGGACCCAAAGGACTACCAGGACCTC
AAGGCCTTCGGGGTCCTAAAGGAGACAAGGGCTTCGGGATGCCAGGTGCGCCAGGTGTAAAGGGGCCTCC
AGGGATGCACGGCCCTCCCGGCCCTGTTGGACTGCCAGGAGTGGGCAAACCAGGAGTGACAGGCTTCCCT
GGGCCCCAGGGCCCCCTGGGAAAGCCAGGGGCTCCAGGAGAACCTGGGCCACAAGGCCCTATTGGGGTAC
CGGGGGTTCAAGGACCTCCTGGGATACCCGGAATTGGAAAGCCAGGCCAGGATGGGATCCCAGGCCAGCC
AGGATTTCCAGGTGGCAAAGGGGAGCAAGGACTGCCAGGGCTACCAGGACCCCCAGGCCTTCCAGGGATT
GGGAAACCAGGCTTCCCAGGACCCAAAGGTGACCGGGGCATGGGAGGTGTTCCTGGGGCTCTTGGACCAA
GAGGGGAGAAAGGACCAATAGGTGCCCCAGGAATAGGGGGTCCTCCAGGAGAGCCAGGCCTGCCTGGAAT
CCCAGGTCCTATGGGCCCTCCAGGTGCTATTGGTTTTCCTGGACCCAAAGGAGAAGGTGGGATTGTAGGG
CCACAGGGGCCACCAGGTCCCAAGGGTGAGCCAGGGCTTCAAGGCTTCCCAGGAAAGCCAGGTTTCCTTG
GTGAAGTAGGGCCTCCTGGCATGAGGGGTTTGCCAGGTCCCATAGGGCCCAAGGGGGAAGCTGGGCAAAA
AGGTGTACCAGGACTCCCTGGTGTTCCAGGGCTTCTCGGACCTAAGGGAGAGCCAGGAATCCCAGGGGAT
CAGGGTTTACAGGGCCCCCCAGGTATCCCAGGGATTGGGGGCCCTAGTGGCCCCATTGGACCACCTGGGA
TTCCAGGCCCCAAAGGGGAGCCGGGCCTCCCAGGGCCCCCTGGGTTCCCTGGTATAGGGAAACCCGGAGT
GGCAGGACTTCATGGCCCCCCAGGGAAGCCTGGTGCCCTTGGTCCTCAAGGCCAGCCTGGCCTTCCAGGA
CCCCCAGGCCCTCCAGGACCTCCAGGACCCCCAGCTGTGATGCCCCCTACACCACCACCCCAGGGAGAGT
ATCTGCCAGATATGGGGCTGGGAATTGATGGCGTGAAACCCCCCCATGCCTACGGGGCTAAGAAAGGCAA
GAATGGAGGGCCAGCCTATGAGATGCCTGCATTTACCGCCGAGCTAACCGCACCTTTCCCACCGGTGGGG
GCCCCAGTGAAGTTTAACAAACTGCTGTATAACGGCAGACAGAACTACAACCCGCAGACAGGCATCTTCA
CCTGTGAGGTCCCTGGTGTCTACTACTTTGCATACCACGTTCACTGCAAGGGGGGCAACGTGTGGGTTGC
TCTATTCAAGAACAACGAGCCCGTGATGTACACGTACGACGAGTACAAAAAGGGCTTCCTGGACCAGGCA
TCTGGGAGTGCAGTGCTGCTGCTCAGGCCCGGAGACCGGGTGTTCCTCCAGATGCCCTCAGAACAGGCTG
CAGGACTGTATGCCGGGCAGTATGTCCACTCCTCCTTTTCAGGATATTTATTGTATCCCATGTAA

Translation (744 aa):
MAVLPGPLQLLGVLLTISLSSIRLIQAGAYYGIKPLPPQIPPQMPPQIPQYQPLGQQVPHMPLAKDGLAM
GKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPGPRGPPGPPGLPGH
GIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKP
GGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFP
GPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGI
GKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVG
PQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGD
QGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPG
PPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVG
APVKFNKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPVMYTYDEYKKGFLDQA
SGSAVLLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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