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Report for CCDS30744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30744.1 Public Homo sapiens 1 SGIP1 24 110 108 CCDS HistoryNCBI Gene:84251Re-query CCDS DB by CCDS ID:30744.1Re-query CCDS DB by GeneID:84251See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30744.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371037.9 ENSP00000360076.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371037.9Link to Ensembl Protein Viewer:ENSP00000360076.3Re-query CCDS DB by Nucleotide ID:ENST00000371037Re-query CCDS DB by Protein ID:ENSP00000360076
Original member Current member NCBI NM_001376534.1 NP_001363463.1 Accepted alive Link to Nucleotide Sequence:NM_001376534.1Link to Protein Sequence:NP_001363463.1Re-query CCDS DB by Nucleotide ID:NM_001376534Re-query CCDS DB by Protein ID:NP_001363463Link to BLAST:NP_001363463.1
Original member Current member NCBI NM_001376535.1 NP_001363464.1 Accepted alive Link to Nucleotide Sequence:NM_001376535.1Link to Protein Sequence:NP_001363464.1Re-query CCDS DB by Nucleotide ID:NM_001376535Re-query CCDS DB by Protein ID:NP_001363464Link to BLAST:NP_001363464.1
Original member Current member NCBI NM_032291.4 NP_115667.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032291.4Link to Protein Sequence:NP_115667.2Re-query CCDS DB by Nucleotide ID:NM_032291Re-query CCDS DB by Protein ID:NP_115667Link to BLAST:NP_115667.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001363463.1 828 Q9BQI5-1 828 100% 0 0
NP_001363464.1 828 Q9BQI5-1 828 100% 0 0
NP_115667.2 828 Q9BQI5-1 828 100% 0 0

Chromosomal Locations for CCDS 30744.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 66534359 66534368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66625847 66625910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66633070 66633094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66635944 66636015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66639777 66639833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66642810 66642864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66643544 66643719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66660513 66660524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66667530 66667541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66670995 66671019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66671944 66671995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66673281 66673366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66677004 66677096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66679678 66679752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66681869 66682369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66689148 66689275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66690190 66690316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66695434 66695493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66719294 66719405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66729264 66729419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66733748 66733880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66739335 66739537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66740658 66740722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66741272 66741436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66743073 66743095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2487 nt):
ATGATGGAAGGATTGAAAAAACGTACAAGGAAGGCCTTTGGAATACGGAAGAAAGAAAAGGACACTGATT
CTACAGGTTCACCAGATAGAGATGGAATTCAGCCCAGCCCACACGAACCACCCTACAATAGCAAAGCAGA
GTGTGCGCGTGAAGGAGGAAAAAAAGTTTCGAAGAAAAGCAATGGGGCACCAAATGGATTTTATGCGGAA
ATTGATTGGGAAAGATATAACTCACCTGAGCTGGATGAAGAAGGCTACAGCATCAGACCCGAGGAACCCG
GCTCTACCAAAGGAAAGCACTTTTATTCTTCAAGTGAATCGGAAGAAGAAGAAGAATCACATAAGAAATT
TAATATCAAGATTAAACCATTGCAATCTAAAGACATTCTTAAGAATGCTGCAACTGTAGATGAATTGAAG
GCATCAATAGGCAACATCGCACTTTCCCCATCACCAGTGAGGAAAAGTCCGAGGCGCAGCCCGGGTGCAA
TTAAAAGGAACTTATCCAGTGAAGAAGTGGCAAGACCCAGGCGTTCCACACCAACTCCAGAACTTATAAG
CAAAAAGCCTCCAGATGACACTACGGCCCTTGCTCCTCTCTTTGGCCCACCACTAGAATCAGCTTTTGAT
GAACAGAAGACAGAAGTTCTTTTAGATCAGCCTGAGATATGGGGTTCAGGCCAACCAATTAATCCAAGCA
TGGAGTCGCCAAAGTTAACAAGGCCTTTTCCCACTGGAACACCTCCACCACTGCCTCCAAAAAATGTACC
AGCTACCCCACCCCGAACAGGATCCCCCTTAACAATTGGACCAGGAAATGACCAGTCAGCCACAGAGGTC
AAAATTGAAAAACTACCATCCATCAATGACTTGGACAGCATTTTTGGGCCAGTATTGTCCCCCAAGTCTG
TTGCTGTTAATGCTGAAGAAAAGTGGGTCCATTTTTCTGATACATCCCCGGAACATGTTACTCCGGAGTT
GACTCCAAGGGAAAAAGTGGTGTCCCCACCAGCTACACCAGACAACCCAGCTGACTCCCCAGCTCCAGGC
CCTCTCGGCCCCCCAGGTCCCACAGGCCCCCCAGGGCCTCCTGGGCCTCCTCGCAATGTACTATCGCCGC
TCAATTTAGAAGAAGTCCAGAAGAAAGTCGCTGAGCAGACCTTCATTAAAGATGATTACTTAGAAACAAT
CTCATCTCCTAAAGATTTTGGGTTGGGACAAAGAGCAACTCCACCTCCCCCACCACCACCCACCTACAGG
ACTGTGGTTTCGTCCCCCGGACCTGGCTCGGGCCCTGGTCCGGGGACCACCAGTGGTGCATCATCCCCTG
CTCGACCAGCCACTCCTTTGGTTCCTTGCAGAAGTACCACTCCACCTCCACCTCCTCCCCGGCCTCCATC
CCGGCCAAAGCTACCTCCAGGAAAACCTGGAGTTGGAGATGTGTCCAGACCTTTTAGCCCTCCCATTCAT
TCTTCCAGCCCTCCTCCAATAGCACCCTTAGCGCGGGCTGAAAGCACTTCTTCAATATCGTCAACCAATT
CCTTGAGCGCAGCCACCACTCCCACAGTTGAGAATGAACAGCCTTCCCTCGTTTGGTTTGACAGAGGAAA
GTTTTATTTGACTTTTGAAGGTTCTTCCAGGGGACCCAGCCCCCTAACCATGGGAGCTCAGGACACTCTC
CCTGTTGCAGCAGCATTTACAGAAACAGTCAATGCCTATTTCAAAGGAGCAGACCCAAGCAAATGTATCG
TTAAGATTACCGGAGAAATGGTGTTGTCATTTCCTGCTGGCATCACCAGACACTTTGCCAACAACCCGTC
CCCAGCTGCTCTGACTTTTCGGGTGATAAATTTCAGCAGGTTAGAACACGTCCTGCCAAACCCCCAACTT
CTCTGCTGTGATAATACACAAAATGATGCCAATACCAAGGAATTCTGGGTAAACATGCCAAATTTGATGA
CTCACCTAAAGAAAGTGTCTGAACAAAAACCCCAGGCTACATATTATAACGTTGACATGCTCAAATATCA
GGTGTCTGCCCAGGGCATTCAGTCCACACCTCTGAACCTGGCAGTGAATTGGCGATGTGAGCCTTCAAGC
ACTGACCTGCGCATAGATTACAAATATAATACAGATGCAATGACGACTGCTGTGGCCCTCAACAATGTGC
AGTTCCTGGTCCCCATCGACGGAGGAGTCACCAAGCTCCAGGCAGTGCTCCCACCAGCAGTCTGGAATGC
TGAACAACAGAGAATATTGTGGAAGATTCCTGATATCTCTCAGAAGTCAGAAAATGGAGGGGTGGGTTCT
TTGTTGGCAAGATTTCAGTTATCTGAAGGCCCAAGCAAACCTTCTCCATTGGTTGTGCAGTTCACAAGTG
AAGGAAGCACCCTTTCTGGCTGTGACATTGAACTTGTTGGAGCAGGGTATCGATTTTCACTCATCAAGAA
AAGGTTTGCTGCAGGAAAATACTTGGCAGATAACTAA

Translation (828 aa):
MMEGLKKRTRKAFGIRKKEKDTDSTGSPDRDGIQPSPHEPPYNSKAECAREGGKKVSKKSNGAPNGFYAE
IDWERYNSPELDEEGYSIRPEEPGSTKGKHFYSSSESEEEEESHKKFNIKIKPLQSKDILKNAATVDELK
ASIGNIALSPSPVRKSPRRSPGAIKRNLSSEEVARPRRSTPTPELISKKPPDDTTALAPLFGPPLESAFD
EQKTEVLLDQPEIWGSGQPINPSMESPKLTRPFPTGTPPPLPPKNVPATPPRTGSPLTIGPGNDQSATEV
KIEKLPSINDLDSIFGPVLSPKSVAVNAEEKWVHFSDTSPEHVTPELTPREKVVSPPATPDNPADSPAPG
PLGPPGPTGPPGPPGPPRNVLSPLNLEEVQKKVAEQTFIKDDYLETISSPKDFGLGQRATPPPPPPPTYR
TVVSSPGPGSGPGPGTTSGASSPARPATPLVPCRSTTPPPPPPRPPSRPKLPPGKPGVGDVSRPFSPPIH
SSSPPPIAPLARAESTSSISSTNSLSAATTPTVENEQPSLVWFDRGKFYLTFEGSSRGPSPLTMGAQDTL
PVAAAFTETVNAYFKGADPSKCIVKITGEMVLSFPAGITRHFANNPSPAALTFRVINFSRLEHVLPNPQL
LCCDNTQNDANTKEFWVNMPNLMTHLKKVSEQKPQATYYNVDMLKYQVSAQGIQSTPLNLAVNWRCEPSS
TDLRIDYKYNTDAMTTAVALNNVQFLVPIDGGVTKLQAVLPPAVWNAEQQRILWKIPDISQKSENGGVGS
LLARFQLSEGPSKPSPLVVQFTSEGSTLSGCDIELVGAGYRFSLIKKRFAAGKYLADN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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