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Report for CCDS3876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3876.1 Public Homo sapiens 5 TAS2R1 24 110 108 CCDS HistoryNCBI Gene:50834Re-query CCDS DB by CCDS ID:3876.1Re-query CCDS DB by GeneID:50834See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3876.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382492.4 ENSP00000371932.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382492.4Link to Ensembl Protein Viewer:ENSP00000371932.2Re-query CCDS DB by Nucleotide ID:ENST00000382492Re-query CCDS DB by Protein ID:ENSP00000371932
Original member Current member NCBI NM_019599.3 NP_062545.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019599.3Link to Protein Sequence:NP_062545.1Re-query CCDS DB by Nucleotide ID:NM_019599Re-query CCDS DB by Protein ID:NP_062545Link to BLAST:NP_062545.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062545.1 299 Q9NYW7 299 100% 0 0

Chromosomal Locations for CCDS 3876.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 9629133 9630032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGCTAGAGTCTCACCTCATTATCTATTTTCTTCTTGCAGTGATACAATTTCTTCTTGGGATTTTCACAA
ATGGCATCATTGTGGTGGTGAATGGCATTGACTTGATCAAGCACAGAAAAATGGCTCCGCTGGATCTCCT
TCTTTCTTGTCTGGCAGTTTCTAGAATTTTTCTGCAGTTGTTCATCTTCTACGTTAATGTGATTGTTATC
TTCTTCATAGAATTCATCATGTGTTCTGCGAATTGTGCAATTCTCTTATTTATAAATGAATTGGAACTTT
GGCTTGCCACATGGCTCGGCGTTTTCTATTGTGCCAAGGTTGCCAGCGTCCGTCACCCACTCTTCATCTG
GTTGAAGATGAGGATATCCAAGCTGGTCCCATGGATGATCCTGGGGTCTCTGCTATATGTATCTATGATT
TGTGTTTTCCATAGCAAATATGCAGGGTTTATGGTCCCATACTTCCTAAGGAAATTTTTCTCCCAAAATG
CCACAATTCAAAAAGAAGATACACTGGCTATACAGATTTTCTCTTTTGTTGCTGAGTTCTCAGTGCCATT
GCTTATCTTCCTTTTTGCTGTTTTGCTCTTGATTTTCTCTCTGGGGAGGCACACCCGGCAAATGAGAAAC
ACAGTGGCCGGCAGCAGGGTTCCTGGCAGGGGTGCACCCATCAGCGCGTTGCTGTCTATCCTGTCCTTCC
TGATCCTCTACTTCTCCCACTGCATGATAAAAGTTTTTCTCTCTTCTCTAAAGTTTCACATCAGAAGGTT
CATCTTTCTGTTCTTCATCCTTGTGATTGGTATATACCCTTCTGGACACTCTCTCATCTTAATTTTAGGA
AATCCTAAATTGAAACAAAATGCAAAAAAGTTCCTCCTCCACAGTAAGTGCTGTCAGTGA

Translation (299 aa):
MLESHLIIYFLLAVIQFLLGIFTNGIIVVVNGIDLIKHRKMAPLDLLLSCLAVSRIFLQLFIFYVNVIVI
FFIEFIMCSANCAILLFINELELWLATWLGVFYCAKVASVRHPLFIWLKMRISKLVPWMILGSLLYVSMI
CVFHSKYAGFMVPYFLRKFFSQNATIQKEDTLAIQIFSFVAEFSVPLLIFLFAVLLLIFSLGRHTRQMRN
TVAGSRVPGRGAPISALLSILSFLILYFSHCMIKVFLSSLKFHIRRFIFLFFILVIGIYPSGHSLILILG
NPKLKQNAKKFLLHSKCCQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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