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Report for CCDS59250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59250.1 Public Homo sapiens 15 POTEB 24 110 108 CCDS HistoryNCBI Gene:100996331Re-query CCDS DB by CCDS ID:59250.1Re-query CCDS DB by GeneID:100996331See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 59250.1
The exon combination of this CCDS representation is inferred based on highly similar paralogous transcript alignments, e.g., AY465170.1 or BC101005.1.

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 59250.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000439682.2 ENSP00000457689.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000439682.2Link to Ensembl Protein Viewer:ENSP00000457689.2Re-query CCDS DB by Nucleotide ID:ENST00000439682Re-query CCDS DB by Protein ID:ENSP00000457689
Original member Current member NCBI NM_001277304.2 NP_001264233.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001277304.2Link to Protein Sequence:NP_001264233.1Re-query CCDS DB by Nucleotide ID:NM_001277304Re-query CCDS DB by Protein ID:NP_001264233Link to BLAST:NP_001264233.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264233.1 544 A0A0A6YYL3 544 100% 0 0

Chromosomal Locations for CCDS 59250.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 21846348 21846560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21848199 21848322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21856792 21856958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21858004 21858048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21859452 21859522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21865016 21865086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21867597 21867734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21869072 21869178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21872007 21872180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21872340 21872454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 21876837 21877246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGGTGGCTGAGGTTTGTTCAATGCCCGCTGCCTCTGCTGTGAAGAAGCCATTTGATCTCAGGAGCAAGA
TGGGCAAGTGGTGCCACCACCGCTTCCCCTGCTGCAGGGGGAGCGGCACGAGCAATGTGGGCACTTCTGG
AGACCATGACGACTCCTTTATGAAGACACTCAGGAGCAAGATGGGCAAGTGGTGCTGTCACTGCTTCCCC
TGCTGCAGGGGGAGCGGCAAGAGCAACGTGGGCACTTGGGGAGACTACGACGACAGCGCCTTCATGGAGC
CGAGGTACCACGTCCGTCGAGAAGATCTGGACAAGCTCCACAGAGCTGCCTGGTGGGGTAAAGTCCCCAG
AAAGGATCTCATCGTCATGCTCAGGGACACTGACATGAACAAGAGGGACAAGCAAAAGAGGACTGCTCTA
CATTTGGCCTCTGCCAATGGAAATTCAGAAGTAGTACAACTCCTGCTGGACAGACGATGTCAACTTAACG
TCCTTGACAACAAAAAAAGGACAGCTCTGATAAAGGCCGTACAATGCCAGGAAGATGAATGTGTGTTAAT
GTTGCTGGAACATGGCGCTGATGGAAATATTCAAGATGAGTATGGAAATACCGCTCTACACTATGCTATC
TACAATGAAGATAAATTAATGGCCAAAGCACTGCTCTTATATGGTGCTGATATTGAATCAAAAAACAAGT
GTGGCCTCACACCACTTTTGCTTGGCGTACATGAACAAAAACAGGAAGTGGTGAAATTTTTAATCAAGAA
AAAAGCTAATTTAAATGCACTTGATAGATATGGAAGAACTGCCCTCATACTTGCTGTATGTTGTGGATCA
GCAAGTATAGTCAATCTTCTACTTGAGCAAAATGTTGATGTATCTTCTCAAGATCTATCTGGACAGACAG
CCAGAGAGTATGCTGTTTCTAGTCATCATCATGTAATTTGTGAATTACTTTCTGACTATAAAGAAAAACA
GATGCTAAAAATCTCTTCTGAAAACAGCAATCCAGAACAAGACTTAAAGCTGACATCAGAGGAAGAGTCA
CAAAGGCTTAAAGTCAGTGAAAATAGCCAGCCAGAGAAAATGTCTCAAGAACCAGAAATAAATAAGGACT
GTGATAGAGAGGTTGAAGAAGAAATAAAGAAGCATGGAAGTAATCCTGTGGGATTACCAGAAAACCTGAC
TAATGGTGCCAGTGCTGGCAATGGTGATGATGGATTAATTCCACAAAGGAAGAGCAGAAAACCTGAAAAT
CAGCAATTTCCTGACACTGAGAATGAAGAGTATCACAGTGACGAACAAAATGATACCCAGAAACAACTTT
CTGAAGAACAGAACACTGGAATATCACAAGATGAGATTCTGACTAATAAACAAAAGCAGATAGAAGTGGC
TGAAAAGGAAATGAATTCTGAGCTTTCTCTTAGTCATAAGAAAGAAGAAGATCTCTTGCGTGAAAACAGC
ATGTTGCGGGAAGAAATTGCCAAGCTAAGACTGGAACTAGATGAAACAAAACATCAGAACCAGCTAAGGG
AAAATAAAATTTTGGAGGAAATTGAAAGTGTAAAAGAAAAACTTCTAAAGACTATACAACTGAATGAAGA
AGCATTAACGAAAACCAGTATTTAA

Translation (544 aa):
MVAEVCSMPAASAVKKPFDLRSKMGKWCHHRFPCCRGSGTSNVGTSGDHDDSFMKTLRSKMGKWCCHCFP
CCRGSGKSNVGTWGDYDDSAFMEPRYHVRREDLDKLHRAAWWGKVPRKDLIVMLRDTDMNKRDKQKRTAL
HLASANGNSEVVQLLLDRRCQLNVLDNKKRTALIKAVQCQEDECVLMLLEHGADGNIQDEYGNTALHYAI
YNEDKLMAKALLLYGADIESKNKCGLTPLLLGVHEQKQEVVKFLIKKKANLNALDRYGRTALILAVCCGS
ASIVNLLLEQNVDVSSQDLSGQTAREYAVSSHHHVICELLSDYKEKQMLKISSENSNPEQDLKLTSEEES
QRLKVSENSQPEKMSQEPEINKDCDREVEEEIKKHGSNPVGLPENLTNGASAGNGDDGLIPQRKSRKPEN
QQFPDTENEEYHSDEQNDTQKQLSEEQNTGISQDEILTNKQKQIEVAEKEMNSELSLSHKKEEDLLRENS
MLREEIAKLRLELDETKHQNQLRENKILEEIESVKEKLLKTIQLNEEALTKTSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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