NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48347.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48347.1 Reviewed, update pending Mus musculus 1 Map3k19 23 108 98 CCDS HistoryNCBI Gene:22625Re-query CCDS DB by CCDS ID:48347.1Re-query CCDS DB by GeneID:22625See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 48347.1
The exon combination of this CCDS representation is inferred based on orthologous transcript alignments (e.g., human AY574901.1, BC137276.1 and BC137277.1). There are no publicly available mouse full-length transcripts supporting this gene; it is partially supported by data in PMID:9160885, and by RNA-Seq data from the ENCODE project.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 48347.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061512.4 ENSMUSP00000056254.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061512.4Link to Ensembl Protein Viewer:ENSMUSP00000056254.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000061512Re-query CCDS DB by Protein ID:ENSMUSP00000056254
Original member NCBI NM_011737.1 NP_035867.1 Updated not alive Link to Nucleotide Sequence:NM_011737.1Link to Protein Sequence:NP_035867.1Re-query CCDS DB by Nucleotide ID:NM_011737Re-query CCDS DB by Protein ID:NP_035867
Current member NCBI NM_011737.2 NP_035867.2 Pending alive Link to Nucleotide Sequence:NM_011737.2Link to Protein Sequence:NP_035867.2Re-query CCDS DB by Nucleotide ID:NM_011737Re-query CCDS DB by Protein ID:NP_035867Link to BLAST:NP_035867.2

Chromosomal Locations for CCDS 48347.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 127815271 127815337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127817235 127817932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127820387 127820533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127821977 127824397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127829056 127829099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127830271 127830530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127832724 127832796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127834535 127834625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127838439 127838551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127840269 127840290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3936 nt):
ATGGATTCTATGCCCAGACCAGAAAGACATGCCGAGTCACTGCTTGACATCTGTCATGAGGCAGGCTCTA
CTCCAATGGAGATGACAGTTTCCCAAACTGAAAACCTCACCTTGCAGAGCATCAGCAGCAGTGAGGACTT
TGACCTTGAAGATGACTTCAGCCCGTTCATATTGGCTAGGGAAGGAGCAGCTCCCAGGGGTGAAAACTGG
CCACGAAGGACAGAAGGTGTGGAGATTATTGTGACGTTTCCACCGGATCCTCTCCAAGAAGCAAGCCAAG
AAGACTTGAAAGAAAGCAATCAGGTGACTTCAGAGCATCAGGAACGGGAACAAGTGCATCCTGTCTCTCC
ACCAGATGACGCGGAGATGGTGGGCCTCACGGGGAGGATGCTAACCACACAGCCTTCACTTCTGAAGACA
GACGGAAGTTCTGAGGAGCTCTGTGGTGTGGACGTGGCTCTCTCACCACCCAGACCTTGCTTAGACTCAA
GCCTTGCTGCATCTGCAGCTGGGGAGGTGGCTCCTTGTGTTCTGAAAGAACAGCAAAGGCAATCTGATGA
GTTTCCTACCTCTGACATAAGCTACAGTAGCCGAAGAACTGGGCTTCCTCTGCCACCACTATCATGCTTG
CCCATGAGATCTTGTATCTTCAATATGGAAAAAAGCCCCAAGTCCCCAAGGCACAGGGAAAGAAAGGTCC
CCAGCCTCAGCCTGTCTGTGCCTAAGCTCCTGGAACCTCTTAGCCGACCTCTTAGCCAATCTGCAGAGTT
TAGTTCATCAAAGAACCATCAAGAAGTCACGCAGGAAGGACCAGTGGAACACACCCTCAGGGGTTCTAAC
TGTACCCTCTGGTCCAGAAACATGTGTTCTTTCCGGAAGAGCGGAAAACAGGGAGTAGCGGAGAGTTGGC
CATCCCAGGAAATGGAAGGGTGGGACAAAACTAAAACCTCTGGCTTCAAAGAAGGGCCATCTTTGTTCTC
TTGTGAGAGTGTCAAAGAAGACACTACTCCTACAGAGAGGGAAAGGGATAGTGGGTACCATGTTAGTGAG
ATGCAAAGAGGGGGAGAGGACTCCCAATATCTTTCATCAAGAAAAAAAGAGAGTTGGACAGCCAGAGTGG
TTGAGCGAGATTCAGGGGTTGAGCACCCCATTCTCTGCAAGCTCCTGGAAGTCTCAAATTCAGAAATGAC
CCCAGCAGAGGAGAAAGAGATCGGAAATGAGAACGTTCCTGATGCCAAAAGCAATTCTGTACACAAATCT
GGAGCAATGGAGCCACATGCAGCGTCAGAAGAGGTTAGTGTTCCTAAGAATGGTCCCAGTGTGAACTCTG
ACGGCCCTGCTGAAGAGCTGGAAGGTCATAGAGACATAGAACAGAACAGAAAAATACCAATGGAGGAAGA
AACAAATCCCGAAATGAATGGGGTGGTGCCGCTTACTCACATCGCATTCCCTGGAGAAGGGACATCCAAG
GGACCCGCTAGAGCCGAACCACACCTCCAAAGGAGAAAGCGCCCGGCGCAGAACAGCAACAGCTTCAACC
TGCTTGCTCACCGAGAACACGACAAACTCCAGACAAATACTCATAGAACCAAGTTGGATTCAAGGACCAA
GGCCAGGAACAGAGCACCCCCTAATCTCATGGTTTCCATCCAAGCATCCATTAAGCCCAACATGCATAAA
AACAGCATAAAAACTCAAGTTTTCCCTGCTTTGGAACTTATAGACCACAGACCTCATCCCTCCTCCAAGT
TTCAAAGGAGAGCACCTCTGACAGAAAAGAAGTCAACGCATCAGACCCAGAAACCTAAAAAGCAAGCATT
TCCTCGAATCGGTAAACATGCAGGCATAAAAAAGCCAGGCATTCCCCTCTCCGCTGAAACAACAGATCCG
AGACTGCACTTCCTGGATTTGAAGTACAGTGACATGTTCAAAGAAATCAACTCAGCCTCCAACGGACCAG
GCATCTATGAGATGTTTGGAACCCCTGTTTATTGTCACATTCGCGAGGCAGAAAGGCACGACCACAGATG
TTACCGTGAGATACGTACGGCTCCATCAGGCCGATGTGTCGTTAATAAATGCCAGTCTTCCGAAAGTGAC
AGGTGCAGCAACAGCAGGGCAAGACTTCTTCAGAAGAGACAACACATTAAACCCCCAAAGCCATTGCATG
GTCTCAGGCAAAAGCACAGAGGGTTCATTTCTAAAGACAAAGGTTGCAAGGATATGGGGGGCCATACAGA
GGATAGCGTTTCAGAACCTGATGGGCAGATGAAATCTCCAGGAAATGACTTTCTATCTTCCAAAGATGAC
GCTCAACTCATGCACTTGATCCCCATCCCTGAACTGTCCCCCGAACAGAAAGCACCCGCTCCAGTCTCAG
ATCTATCCATTGTTGAGGAAATCTTCACAGAGGAGTGTGCAGACGAAGAAGGCATTCTCAACGATGACAG
CCTTACCCAAAGCCTTGGCGATCTGAAAGAGCCTGAAGGGTTGCACCCCCAGGCCCCTCTCGTTCCTTCA
GAAAACAGCTGGGCTGTGCTTAGCGAGAAGCGTTCGGGCAAGCGTGTGTCTCCAGAAAAGCACAATGTAG
AACCTCTTGATAAAATAAATGCTGAGCAGATGTTCCCGGGTTACCTGGAGTTTGATAGCCTTTCAGAGAA
GTCTAAAACACTGGTGAGCTTTTCCAGTTGCTCTTTCCAGGAGAACCTGGAAAGAGCCCCTTCCCCTACA
GAACAACACTGGGCACGTTCTTTGGAGCAGGACAGCTTAGAAAATAACTCCACCACATACCAGACATTTG
GAAAGATTTCCCAGGAAATCTTAGACCCAGGAAAGAATGAAGAGTTGACAGACGAGTTGCTGGGTTGTCT
AGTTGAAGAACTGTTAGCACTCGATGAGAAAGATAACAACTCTTGCCAAATAATGACAAATGAGGCAGAC
GCCAAAAACCTGAATCTTGTCTTCAGCAGGAGAGGCAATACCATCGAAGAACTGGGCAGAGAGACAACAG
ATGTCAAACTTCAGAGGTGTATTAATGGATTCCGGATATATGATGAGGAAAACTTTCTTACCTCAAATGA
AAAGAAGACACTTTCTGACAAGAGCTTAAACCACGAAGAGGCTATCTTCTGGACCAAGGGTGAGATCCTT
GGGAGAGGAGCCTATGGCACAGTATACTGTGGGCTCACCAGCCTAGGGCAGCTAATAGCTGTAAAACAGG
TGGCCTTGGATACTTCTGATAAACTGGCTACCGAGAAGGAATACCGGAAACTGCAGGAGGAAGTGGATTT
GCTGAAGGCACTGAAGCATGTCAACATAGTAGCTTATCTAGGGACGTGCTTGGAGGAGAACACTCTGAGC
ATCTTCATGGAATTTGTCCCTGGTGGTTCCATCTCTAGTATAATAAACCGCTTTGGGCCACTGCCTGAGA
TGGTGTTCTGTAAATACACAAGACAGATCCTGCAAGGTGTTGCCTATCTCCATGACAACTGTGTGGTACA
TCGAGATATCAAAGGGAACAACGTCATGCTCATGCCAACGGGAATAATAAAGTTGATTGACTTCGGCTGT
GCCAAGCGTTTGGCCTGGGCAGGCTTAAATGGTACCCACAGTGACATGCTCAAGTCCATGCGTGGGACTC
CATACTGGATGGCCCCGGAGGTCATCAATGAGTCTGGCTATGGAAGGAAATCAGATATATGGAGCATTGG
CTGCACCGTGTTCGAGATGGCCACAGGGAAGCCTCCTTTGGCTTCCATGGATAGGATGGCAGCCATGTTC
TACATTGGAGCCCACAGAGGCCTAATGCCTCCTCTACCTGCCCGATTCTCAGAACCTGCTGCGGACTTCG
TGCGTTTGTGCCTGACCAGGGACCAGCATGAGAGACCTTCTGCTCTCCAGCTCTTGAAGCACTCCTTCCT
GAAGAGAAGCCAGTGA

Translation (1311 aa):
MDSMPRPERHAESLLDICHEAGSTPMEMTVSQTENLTLQSISSSEDFDLEDDFSPFILAREGAAPRGENW
PRRTEGVEIIVTFPPDPLQEASQEDLKESNQVTSEHQEREQVHPVSPPDDAEMVGLTGRMLTTQPSLLKT
DGSSEELCGVDVALSPPRPCLDSSLAASAAGEVAPCVLKEQQRQSDEFPTSDISYSSRRTGLPLPPLSCL
PMRSCIFNMEKSPKSPRHRERKVPSLSLSVPKLLEPLSRPLSQSAEFSSSKNHQEVTQEGPVEHTLRGSN
CTLWSRNMCSFRKSGKQGVAESWPSQEMEGWDKTKTSGFKEGPSLFSCESVKEDTTPTERERDSGYHVSE
MQRGGEDSQYLSSRKKESWTARVVERDSGVEHPILCKLLEVSNSEMTPAEEKEIGNENVPDAKSNSVHKS
GAMEPHAASEEVSVPKNGPSVNSDGPAEELEGHRDIEQNRKIPMEEETNPEMNGVVPLTHIAFPGEGTSK
GPARAEPHLQRRKRPAQNSNSFNLLAHREHDKLQTNTHRTKLDSRTKARNRAPPNLMVSIQASIKPNMHK
NSIKTQVFPALELIDHRPHPSSKFQRRAPLTEKKSTHQTQKPKKQAFPRIGKHAGIKKPGIPLSAETTDP
RLHFLDLKYSDMFKEINSASNGPGIYEMFGTPVYCHIREAERHDHRCYREIRTAPSGRCVVNKCQSSESD
RCSNSRARLLQKRQHIKPPKPLHGLRQKHRGFISKDKGCKDMGGHTEDSVSEPDGQMKSPGNDFLSSKDD
AQLMHLIPIPELSPEQKAPAPVSDLSIVEEIFTEECADEEGILNDDSLTQSLGDLKEPEGLHPQAPLVPS
ENSWAVLSEKRSGKRVSPEKHNVEPLDKINAEQMFPGYLEFDSLSEKSKTLVSFSSCSFQENLERAPSPT
EQHWARSLEQDSLENNSTTYQTFGKISQEILDPGKNEELTDELLGCLVEELLALDEKDNNSCQIMTNEAD
AKNLNLVFSRRGNTIEELGRETTDVKLQRCINGFRIYDEENFLTSNEKKTLSDKSLNHEEAIFWTKGEIL
GRGAYGTVYCGLTSLGQLIAVKQVALDTSDKLATEKEYRKLQEEVDLLKALKHVNIVAYLGTCLEENTLS
IFMEFVPGGSISSIINRFGPLPEMVFCKYTRQILQGVAYLHDNCVVHRDIKGNNVMLMPTGIIKLIDFGC
AKRLAWAGLNGTHSDMLKSMRGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRMAAMF
YIGAHRGLMPPLPARFSEPAADFVRLCLTRDQHERPSALQLLKHSFLKRSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH