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Report for CCDS36230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36230.1 Public Mus musculus 11 Tlcd3a 23 108 98 CCDS HistoryNCBI Gene:116972Re-query CCDS DB by CCDS ID:36230.1Re-query CCDS DB by GeneID:116972See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36230.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094014.9 ENSMUSP00000091553.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094014.9Link to Ensembl Protein Viewer:ENSMUSP00000091553.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094014Re-query CCDS DB by Protein ID:ENSMUSP00000091553
Original member NCBI NM_027773.3 NP_082049.1 Updated not alive Link to Nucleotide Sequence:NM_027773.3Link to Protein Sequence:NP_082049.1Re-query CCDS DB by Nucleotide ID:NM_027773Re-query CCDS DB by Protein ID:NP_082049
Current member NCBI NM_027773.4 NP_082049.1 Accepted alive Link to Nucleotide Sequence:NM_027773.4Link to Protein Sequence:NP_082049.1Re-query CCDS DB by Nucleotide ID:NM_027773Re-query CCDS DB by Protein ID:NP_082049Link to BLAST:NP_082049.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082049.1 257 Q5ND56 257 100% 0 0

Chromosomal Locations for CCDS 36230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76202134 76202255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76202552 76202635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76205254 76205455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76207128 76207223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76207910 76208179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGCTGCTGACTCTAGCCAGCGGCGCGCTCTTCTTCCCCGGGCTCTTCGCGCTCAGCATCTGGGCGCTGC
ACCGTTTGCGGCCCGGATGGACGGAAGACGACTGCCTGACGGTCGGCACCAGGTTAGTGTCCTCAGTGCA
GGCAGTGCTGGCCACCTGGGCGGGGCTCACCGTCATCATCTCCTGCAAGAACGTGGTCTCAGACAGGCAC
TGGCTTGCCACAGAATATGTCTGGTTTTTGATTCCATATATGATCTATGACTTCTATGCCATGTACTGCT
GCGAACGGTGCCGAACCAAAAGCCAGAAACTCACACGCACCACCATTATCCGAAACTTCCTGATTGAAAA
CCGCCTTATGGTCACACATCACACGGTCATTCTGTTATTCCTTGTACCTATTTCACAGAAGCTCCGAGGA
GACCTTGGAGACTTCTTTGTCGGATGCATCTTCACAGCAGAATTGAGTACTCCGTTTGTGTCGCTGGCCA
GAATAATGATCCAGCTAAAGCAGCAGCATACGCTTCTTTACAAGGTCAATGGAATCCTCACGGTGACCAC
CTTTCTGTTCTGCCGGATCCTTCTGTTCCCATTCATGTACTGGTCCTATGGCCAACAAAAAGGACTAAGC
CTGCTCCAAGTGCCATTTAATATCCCTTTACACTGCAACATGGCCAATGCCGTCCTCATCTCTCCCCAGC
TCTACTGGTTCTCACTGCTGTGCAAGAAGGCGGCCCGGCTCTTTGACACTGCCAAAGCCAAAAAGGATGG
TTAA

Translation (257 aa):
MLLTLASGALFFPGLFALSIWALHRLRPGWTEDDCLTVGTRLVSSVQAVLATWAGLTVIISCKNVVSDRH
WLATEYVWFLIPYMIYDFYAMYCCERCRTKSQKLTRTTIIRNFLIENRLMVTHHTVILLFLVPISQKLRG
DLGDFFVGCIFTAELSTPFVSLARIMIQLKQQHTLLYKVNGILTVTTFLFCRILLFPFMYWSYGQQKGLS
LLQVPFNIPLHCNMANAVLISPQLYWFSLLCKKAARLFDTAKAKKDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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