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Report for CCDS88452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88452.1 Public Mus musculus 13 Ippk 23 108 98 CCDS HistoryNCBI Gene:75678Re-query CCDS DB by CCDS ID:88452.1Re-query CCDS DB by GeneID:75678See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88452.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021817.9 ENSMUSP00000021817.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021817.9Link to Ensembl Protein Viewer:ENSMUSP00000021817.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000021817Re-query CCDS DB by Protein ID:ENSMUSP00000021817
Original member NCBI NM_001276399.1 NP_001263328.1 Updated not alive Link to Nucleotide Sequence:NM_001276399.1Link to Protein Sequence:NP_001263328.1Re-query CCDS DB by Nucleotide ID:NM_001276399Re-query CCDS DB by Protein ID:NP_001263328
Current member NCBI NM_001276399.2 NP_001263328.1 Accepted alive Link to Nucleotide Sequence:NM_001276399.2Link to Protein Sequence:NP_001263328.1Re-query CCDS DB by Nucleotide ID:NM_001276399Re-query CCDS DB by Protein ID:NP_001263328Link to BLAST:NP_001263328.1

Chromosomal Locations for CCDS 88452.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49421711 49421938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49430869 49430916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49432370 49432465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49433829 49433895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49435470 49435591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49436711 49436800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49441953 49442011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49443422 49443494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49446303 49446576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49449237 49449387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49449981 49450083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49458613 49458692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49461534 49461759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGCGCTGTGCGTGCCGCGTGGCCTCACACCGTGCAGCCTCCCCCGGGATGCTCGTCTTACTGTCAGGCA
ACGGTGGGCCAGAGGCTGAGCCTGGACCAGGGCCTGGGCAGCACAGGGGAAAGTTCCCAGAGTGCTGTCA
GCCCACCGAGTGGAGTTCAGCCTCGAGAAACCACAGAGCTGGTGTTCTGCCTTGCTGCTGCGCTGTCAGG
AACGGGGCGCTGCCACAGCGCTGTGTAGTTCTGCGTTTTCTGAAGTTTCCTCCAAATAAGAAGAAGACCT
CAGAAGAGATACTTCAGCATCTGCAGAACATAGTAGACTTTGGCAAAAATGTCATGAAAGACTTTTTGGG
AGAGAACTATGTTCATTGTGGGGAAGTTGTTCAGCTGCCTTTAGAGTTTGTGAAACAACTCTGTTTAAAG
ATACAGTGTGAAAGACCAGAGTCCCGTTGTGACAAGGACCTGGACACATTCAGTGGTTATGCTATGTGCC
TTCCCAATTTAACCAGACTTCAGACCTTCCACTTTGCAGAGCACCGGCCGATTCTGTGTGTAGAGATTAA
GCCAAAATGTGGGTTTATTCCTTTCTCAAATGATGTTACCCACGAGATGAAGCACAAGGTGTGCCGATAC
TGCATGCACCAGCACCTCAAGGTAGCAACTGGAAAGTGGAAGAAAATCAGTAAATACTGTCCCCTCGACC
TCTACTCAGGAAATAAGCAGCGCATGCACTTTGCCCTCAGAAGTCTGCTGCAGGAGACACAGAATAATCT
TAGGATATTTAAGAATGGAGAGCTGATTTATGGTTGTGGTGATGCCCGGAGCCCTGTGGCTGACTTGAAG
GAGCTTGCACACCACCTGAAGCCCTTCTTCTTCCCTTCCAACGGCTTGGCCAGTGGGCCTCACTGCACGA
AGGCTGTGATCCGTGAGCTGGTGCATGTTATCACCAGGGTGCTGCTGAGCAGCTCAGAAAAAGCCCGAGC
TGGTGCCCTGAGGCTTGGGCTCCAGGGCCCACGAGTCTGTGAAGCCAGTCCTTTCAGCAGGAGCCTACAC
AACCAAGGAAAAAACACCTCAGAGCACTCGGGGTTACCGAAGGGCTGTCTTCTGTACAAAACCCTCCAGG
TGCAGATGTTGGACCAGCTGGACATCGAAGGCCTCTACCCTCTGTACAAACGGGTTGAGCAATACCTGGA
GGAGTTTCCTGAGGAGAGGAAAACATTACAGATAGATGGGCCTTATGATGAAGTATTTTACCAGAAACTG
CTTGATCTGTCCACTGAGGATGATGGGACAGTGGCCTTTGCATTAACAAAGGTGCAGCAATACAGAGTAG
CCATGACTGCCAAGGACTGTTCCATCATGATCGCACTTTCCCCTTGTCTACAGGGCACCAGCTCTGACCA
GAGGCCTGTTATTCCTTCGTCAAGATCCCGGCTGGCCTTCTCTGTGTCTGTATTGGACCTCGACCTCAAG
CCCTATGAGAGCATTCCTCATCAGTATAAACTAGACAGCAAGATAGTCAACTATTACTCAAAGACTGTGC
ATGCCAAAGATGACACTGTGAGGTCGACTCGGTTCAAGGAACATGAAGATTGCACATTAGTTCTCCATAA
GGTCTAA

Translation (538 aa):
MRCACRVASHRAASPGMLVLLSGNGGPEAEPGPGPGQHRGKFPECCQPTEWSSASRNHRAGVLPCCCAVR
NGALPQRCVVLRFLKFPPNKKKTSEEILQHLQNIVDFGKNVMKDFLGENYVHCGEVVQLPLEFVKQLCLK
IQCERPESRCDKDLDTFSGYAMCLPNLTRLQTFHFAEHRPILCVEIKPKCGFIPFSNDVTHEMKHKVCRY
CMHQHLKVATGKWKKISKYCPLDLYSGNKQRMHFALRSLLQETQNNLRIFKNGELIYGCGDARSPVADLK
ELAHHLKPFFFPSNGLASGPHCTKAVIRELVHVITRVLLSSSEKARAGALRLGLQGPRVCEASPFSRSLH
NQGKNTSEHSGLPKGCLLYKTLQVQMLDQLDIEGLYPLYKRVEQYLEEFPEERKTLQIDGPYDEVFYQKL
LDLSTEDDGTVAFALTKVQQYRVAMTAKDCSIMIALSPCLQGTSSDQRPVIPSSRSRLAFSVSVLDLDLK
PYESIPHQYKLDSKIVNYYSKTVHAKDDTVRSTRFKEHEDCTLVLHKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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