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Report for CCDS47140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47140.1 Public Homo sapiens 4 C4orf51 24 110 108 CCDS HistoryNCBI Gene:646603Re-query CCDS DB by CCDS ID:47140.1Re-query CCDS DB by GeneID:646603See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47140.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000438731.7 ENSP00000391404.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000438731.7Link to Ensembl Protein Viewer:ENSP00000391404.1Re-query CCDS DB by Nucleotide ID:ENST00000438731Re-query CCDS DB by Protein ID:ENSP00000391404
Original member Current member NCBI NM_001080531.3 NP_001074000.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080531.3Link to Protein Sequence:NP_001074000.1Re-query CCDS DB by Nucleotide ID:NM_001080531Re-query CCDS DB by Protein ID:NP_001074000Link to BLAST:NP_001074000.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074000.1 202 C9J302 202 100% 0 0

Chromosomal Locations for CCDS 47140.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 145680204 145680436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145696559 145696632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145726911 145726969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145729169 145729229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145729892 145729965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 145732453 145732560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGTCACACTACTTCTACTTGACTCCACAAATTCTTCTGCCCTTTAGCCCTCTTACTTCTCAAGAGTTTG
ATCTGATCAGACGCAAGGCTGGAGCATCTTGGCAGGATGAAACACGATGGTCAGATTCTTCCGTGACAAC
ATACACAGGCAGTTACCGGAAAAAACAACTGGACAAGTCCATGTGCAGCCAATTTTCTTTTAGAGCAGGA
CAGCATGAGCCTGAGTGTAAACAGATGTCATTGACAAACAGTTCTGCCTGTCATCTTCTCTGCTGGGCTG
GTACCCAAGAGACTACAGATATCAAAGGACTATTCCCTGATATAACCAGGCCCTTTAAAAAGTCATTTGA
TGTCAAGCATGGAGTGGCACATCAAATTTGGGATTTTGGTGATTGTTTTCCGACACCTCCAAATTATGGA
AAATACTGTGTGAGACCTAAAAAGCCAGCACAGGAGGCCCTGATAAACTACAGTCGACGAGGGAAAGGTG
TCCTAAAGCATCTTCATGGACGGTGCGATTCTGAAAGCAAGGTTTGCTCATCTGAGGATTCAGAAGCTGA
TCGATACTCCGATTATGGCTGGGGAGGACCCTCATCGCCATTTAACTGA

Translation (202 aa):
MSHYFYLTPQILLPFSPLTSQEFDLIRRKAGASWQDETRWSDSSVTTYTGSYRKKQLDKSMCSQFSFRAG
QHEPECKQMSLTNSSACHLLCWAGTQETTDIKGLFPDITRPFKKSFDVKHGVAHQIWDFGDCFPTPPNYG
KYCVRPKKPAQEALINYSRRGKGVLKHLHGRCDSESKVCSSEDSEADRYSDYGWGGPSSPFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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