NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2830.1 Public Homo sapiens 3 HEMK1 24 110 108 CCDS HistoryNCBI Gene:51409Re-query CCDS DB by CCDS ID:2830.1Re-query CCDS DB by GeneID:51409See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2830.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000232854.9 ENSP00000232854.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000232854.9Link to Ensembl Protein Viewer:ENSP00000232854.4Re-query CCDS DB by Nucleotide ID:ENST00000232854Re-query CCDS DB by Protein ID:ENSP00000232854
Original member Current member EBI ENST00000455834.5 ENSP00000404334.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455834.5Link to Ensembl Protein Viewer:ENSP00000404334.1Re-query CCDS DB by Nucleotide ID:ENST00000455834Re-query CCDS DB by Protein ID:ENSP00000404334
Original member Current member EBI ENST00000434410.5 ENSP00000404843.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000434410.5Link to Ensembl Protein Viewer:ENSP00000404843.1Re-query CCDS DB by Nucleotide ID:ENST00000434410Re-query CCDS DB by Protein ID:ENSP00000404843
Original member Current member NCBI NM_001317851.2 NP_001304780.1 Accepted alive Link to Nucleotide Sequence:NM_001317851.2Link to Protein Sequence:NP_001304780.1Re-query CCDS DB by Nucleotide ID:NM_001317851Re-query CCDS DB by Protein ID:NP_001304780Link to BLAST:NP_001304780.1
Original member Current member NCBI NM_001377420.1 NP_001364349.1 Accepted alive Link to Nucleotide Sequence:NM_001377420.1Link to Protein Sequence:NP_001364349.1Re-query CCDS DB by Nucleotide ID:NM_001377420Re-query CCDS DB by Protein ID:NP_001364349Link to BLAST:NP_001364349.1
Original member Current member NCBI NM_001377421.1 NP_001364350.1 Accepted alive Link to Nucleotide Sequence:NM_001377421.1Link to Protein Sequence:NP_001364350.1Re-query CCDS DB by Nucleotide ID:NM_001377421Re-query CCDS DB by Protein ID:NP_001364350Link to BLAST:NP_001364350.1
Original member Current member NCBI NM_001377422.1 NP_001364351.1 Accepted alive Link to Nucleotide Sequence:NM_001377422.1Link to Protein Sequence:NP_001364351.1Re-query CCDS DB by Nucleotide ID:NM_001377422Re-query CCDS DB by Protein ID:NP_001364351Link to BLAST:NP_001364351.1
Original member Current member NCBI NM_016173.5 NP_057257.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016173.5Link to Protein Sequence:NP_057257.1Re-query CCDS DB by Nucleotide ID:NM_016173Re-query CCDS DB by Protein ID:NP_057257Link to BLAST:NP_057257.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304780.1 338 Q9Y5R4 338 100% 0 0
NP_001364349.1 338 Q9Y5R4 338 100% 0 0
NP_001364350.1 338 Q9Y5R4 338 100% 0 0
NP_001364351.1 338 Q9Y5R4 338 100% 0 0
NP_057257.1 338 Q9Y5R4 338 100% 0 0

Chromosomal Locations for CCDS 2830.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 50571105 50571332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50571710 50571801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50572115 50572208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50577052 50577186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50577509 50577573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50577826 50577875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50578821 50578926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50579844 50579939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50580116 50580229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50580381 50580417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGAGCTTTGGGGCCGAATGCTGTGGGCCCTCCTGTCTGGCCCAGGGAGGAGGGGAAGTACCCGGGGCT
GGGCCTTCAGCTCATGGCAACCCCAACCACCTCTGGCTGGGTTATCCAGTGCCATAGAACTGGTCAGCCA
CTGGACTGGGGTCTTTGAGAAGAGGGGTATCCCTGAGGCCCGGGAATCCAGTGAGTACATCGTGGCTCAT
GTCCTTGGAGCCAAAACATTTCAGAGCCTGAGGCCGGCACTTTGGACCCAGCCCTTGACCTCTCAGCAAC
TACAGTGTATCCGGGAGCTGAGTAGCCGTCGATTGCAGAGGATGCCGGTGCAGTACATCCTTGGAGAGTG
GGACTTCCAGGGGCTCAGCCTAAGGATGGTGCCCCCAGTGTTTATTCCTCGGCCAGAAACAGAGGAACTG
GTTGAGTGGGTGCTGGAAGAGGTGGCCCAGAGGTCCCATGCTGTGGGATCCCCAGGCAGCCCCCTCATTC
TGGAGGTGGGCTGCGGATCAGGAGCCATCTCCCTCAGCCTGCTGAGCCAGCTCCCCCAGAGCCGAGTCAT
TGCTGTGGATAAGCGGGAAGCTGCTATCTCTCTGACCCATGAGAATGCTCAGAGGCTTCGGTTGCAGGAC
AGGATTTGGATCATCCACCTCGACATGACCTCAGAAAGGAGCTGGACACACCTGCCCTGGGGCCCCATGG
ACCTGATTGTCAGCAACCCTCCCTACGTCTTCCACCAGGACATGGAGCAGCTGGCCCCTGAGATCCGCAG
CTATGAAGACCCCGCGGCCCTGGATGGTGGGGAGGAGGGCATGGACATCATTACCCACATTCTGGCCTTG
GCACCCCGGCTCCTGAAAGACTCTGGTAGTATCTTCTTAGAAGTGGACCCAAGGCACCCGGAGCTTGTCA
GCAGCTGGCTTCAGAGCCGGCCTGACCTGTACCTTAATCTTGTGGCTGTGCGCAGGGACTTCTGTGGGAG
GCCCCGGTTCCTGCATATCCGGAGGTCTGGGCCATAG

Translation (338 aa):
MELWGRMLWALLSGPGRRGSTRGWAFSSWQPQPPLAGLSSAIELVSHWTGVFEKRGIPEARESSEYIVAH
VLGAKTFQSLRPALWTQPLTSQQLQCIRELSSRRLQRMPVQYILGEWDFQGLSLRMVPPVFIPRPETEEL
VEWVLEEVAQRSHAVGSPGSPLILEVGCGSGAISLSLLSQLPQSRVIAVDKREAAISLTHENAQRLRLQD
RIWIIHLDMTSERSWTHLPWGPMDLIVSNPPYVFHQDMEQLAPEIRSYEDPAALDGGEEGMDIITHILAL
APRLLKDSGSIFLEVDPRHPELVSSWLQSRPDLYLNLVAVRRDFCGRPRFLHIRRSGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH