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Report for CCDS216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
216.1 Public Homo sapiens 1 NBPF3 24 110 108 CCDS HistoryNCBI Gene:84224Re-query CCDS DB by CCDS ID:216.1Re-query CCDS DB by GeneID:84224See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 216.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318249.10 ENSP00000316782.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318249.10Link to Ensembl Protein Viewer:ENSP00000316782.5Re-query CCDS DB by Nucleotide ID:ENST00000318249Re-query CCDS DB by Protein ID:ENSP00000316782
Original member Current member NCBI NM_032264.6 NP_115640.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032264.6Link to Protein Sequence:NP_115640.1Re-query CCDS DB by Nucleotide ID:NM_032264Re-query CCDS DB by Protein ID:NP_115640Link to BLAST:NP_115640.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115640.1 633 Q9H094-1 633 100% 0 0

Chromosomal Locations for CCDS 216.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 21445087 21445219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21468688 21468897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21470632 21470734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21471569 21471783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21472843 21472915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21473380 21473585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21474900 21474951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21478144 21478307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21479349 21479400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21480051 21480223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21480930 21480981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21481597 21481769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21482484 21482535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21483143 21483386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1902 nt):
ATGCCACTGACTCCCACTGTCCAGGGCTTCCAGTGGACTCTCCGAGGCCCTGATGTAGAAACTTCCCCAT
TCGGTGCACCAAGAGCAGCCTCACATGGTGTGGGCCGACATCAAGAGCTGCGAGATCCAACAGTCCCTGG
CCCCACCTCTTCTGCCACAAACGTCAGCATGGTGGTATCTGCCGGCCCTTGGTCCGGTGAGAAGGCAGAG
ATGAACATTCTAGAAATCAACAAGAAATCGCGCCCCCAGCTGGCAGAGAACAAACAGCAGTTCAGAAACC
TCAAACAGAAATGTCTTGTAACTCAAGTGGCCTACTTCCTGGCCAACCGGCAAAATAATTACGACTATGA
AGACTGCAAAGACCTCATAAAATCTATGCTGAGGGATGAGCGGCTGCTCACAGAAGAGAAGCTTGCAGAG
GAGCTCGGGCAAGCTGAGGAGCTCAGGCAATATAAAGTCCTGGTTCACTCTCAGGAACGAGAGCTGACCC
AGTTAAGGGAGAAGTTACAGGAAGGGAGAGATGCCTCCCGCTCATTGAATCAGCATCTCCAGGCCCTCCT
CACTCCGGATGAGCCGGACAACTCCCAGGGACGGGACCTCCGAGAACAGCTGGCTGAGGGATGTAGGCTG
GCACAGCACCTCGTCCAAAAGCTCAGCCCAGAAAATGATGACGATGAGGATGAAGATGTTAAAGTTGAGG
AGGCTGAGAAAGTACAGGAATTATATGCCCCCAGGGAGGTGCAGAAGGCTGAAGAAAAGGAAGTCCCTGA
GGACTCACTGGAGGAGTGTGCCATCACTTGTTCAAATAGCCACCACCCTTGTGAGTCCAACCAGCCTTAC
GGGAACACCAGAATCACATTTGAGGAAGACCAAGTCGACTCAACTCTCATTGACTCATCCTCTCATGATG
AATGGTTGGATGCTGTATGCATTATCCCAGAAAATGAAAGTGATCATGAGCAAGAGGAAGAAAAAGGGCC
AGTGTCTCCCAGGAATCTGCAGGAGTCTGAAGAGGAGGAAGCCCCCCAGGAGTCCTGGGATGAAGGTGAT
TGGACTCTCTCAATTCCTCCTGACATGTCTGCCTCATACCAGTCTGACAGGAGCACCTTTCACTCAGTAG
AGGAACAGCAAGTCGGCTTGGCTCTTGACATAGGCAGACATTGGTGTGATCAAGTGAAAAAGGAGGACCA
AGAGGCCACAAGTCCCAGGCTCAGCAGGGAGCTGCTGGATGAGAAAGAGCCTGAAGTCTTGCAGGACTCA
CTGGATAGATTTTATTCAACTCCTTTTGAGTACCTGGAACTGCCTGACTTATGCCAGCCCTACAGAAGTG
ACTTTTACTCATTGCAGGAACAACACCTTGGCTTGGCTCTTGACTTGGACAGAATGAAAAAGGACCAAGA
AGAGGAAGAAGACCAAGGCCCACCATGCCCCAGGCTCAGCAGAGAGCTGCCGGAGGTAGTAGAGCCTGAG
GACTTGCAGGACTCACTGGATAGATGGTATTCGACTCCTTTCAGTTATCCAGAACTGCCTGATTCATGCC
AGCCCTACGGAAGTTGCTTTTACTCATTGGAGGAAGAACACGTTGGCTTTTCTCTTGACGTGGATGAAAT
TGAAAAGTACCAAGAAGGGGAAGAAGATCAAAAGCCACCATGCCCCAGGCTCAACGAGGTGCTGATGGAA
GCAGAAGAGCCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCGACTACTTCAACTTACTTTCAAC
TACATGCCTCATTCCAGCAGTATAGAAGTGCCTTTTACTCATTTGAGGAACAGGACGTCAGCTTGGCCCT
TGACGTGGACAATAGGTTTTTTACTTTGACAGTGATAAGGCACCACCTGGCCTTCCAGATGGGAGTCATA
TTCCCACACTAA

Translation (633 aa):
MPLTPTVQGFQWTLRGPDVETSPFGAPRAASHGVGRHQELRDPTVPGPTSSATNVSMVVSAGPWSGEKAE
MNILEINKKSRPQLAENKQQFRNLKQKCLVTQVAYFLANRQNNYDYEDCKDLIKSMLRDERLLTEEKLAE
ELGQAEELRQYKVLVHSQERELTQLREKLQEGRDASRSLNQHLQALLTPDEPDNSQGRDLREQLAEGCRL
AQHLVQKLSPENDDDEDEDVKVEEAEKVQELYAPREVQKAEEKEVPEDSLEECAITCSNSHHPCESNQPY
GNTRITFEEDQVDSTLIDSSSHDEWLDAVCIIPENESDHEQEEEKGPVSPRNLQESEEEEAPQESWDEGD
WTLSIPPDMSASYQSDRSTFHSVEEQQVGLALDIGRHWCDQVKKEDQEATSPRLSRELLDEKEPEVLQDS
LDRFYSTPFEYLELPDLCQPYRSDFYSLQEQHLGLALDLDRMKKDQEEEEDQGPPCPRLSRELPEVVEPE
DLQDSLDRWYSTPFSYPELPDSCQPYGSCFYSLEEEHVGFSLDVDEIEKYQEGEEDQKPPCPRLNEVLME
AEEPEVLQDSLDRCYSTTSTYFQLHASFQQYRSAFYSFEEQDVSLALDVDNRFFTLTVIRHHLAFQMGVI
FPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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