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Report for CCDS54955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54955.1 Public Homo sapiens 5 ZFP62 24 110 108 CCDS HistoryNCBI Gene:643836Re-query CCDS DB by CCDS ID:54955.1Re-query CCDS DB by GeneID:643836See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54955.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000502412.2 ENSP00000423820.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000502412.2Link to Ensembl Protein Viewer:ENSP00000423820.1Re-query CCDS DB by Nucleotide ID:ENST00000502412Re-query CCDS DB by Protein ID:ENSP00000423820
Original member Current member NCBI NM_001172638.2 NP_001166109.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001172638.2Link to Protein Sequence:NP_001166109.1Re-query CCDS DB by Nucleotide ID:NM_001172638Re-query CCDS DB by Protein ID:NP_001166109Link to BLAST:NP_001166109.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166109.1 900 Q8NB50-1 900 100% 0 0

Chromosomal Locations for CCDS 54955.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 180848792 180851493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180861219 180861219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2703 nt):
ATGTCACATTTGAAGACGAGCACTGAGGATGAGGAACCAACTGAAGAATATGAAAATGTTGGAAATGCAG
CATCTAAGTGGCCAAAAGTGGAGGATCCTATGCCTGAATCTAAGGTTGGTGACACATGTGTTTGGGATAG
CAAGGTAGAGAATCAACAGAAAAAGCCTGTGGAAAACAGGATGAAGGAGGACAAAAGCAGCATCAGGGAA
GCAATCAGCAAAGCCAAGAGTACAGCAAATATAAAGACAGAACAGGAAGGTGAGGCATCTGAGAAGAGCT
TGCATCTGAGCCCACAGCATATCACACACCAGACTATGCCTATAGGACAGAGAGGCAGTGAGCAAGGCAA
ACGTGTGGAGAACATTAATGGAACCTCCTACCCTAGTCTACAGCAGAAAACCAATGCTGTTAAGAAATTA
CATAAATGTGATGAATGTGGGAAATCCTTCAAATATAATTCCCGCCTTGTTCAACATAAAATTATGCACA
CTGGGGAAAAGCGCTATGAATGTGATGACTGTGGAGGGACTTTCCGGAGCAGCTCGAGCCTTCGGGTCCA
CAAACGGATCCACACTGGGGAGAAGCCGTACAAGTGTGAGGAATGTGGGAAAGCCTACATGTCCTACTCC
AGCCTTATAAACCACAAAAGCACCCATTCTGGGGAGAAGAACTGTAAATGTGATGAATGTGGAAAATCCT
TCAATTATAGCTCTGTTCTGGACCAGCATAAAAGGATCCACACTGGGGAGAAGCCCTATGAATGTGGTGA
GTGTGGGAAGGCCTTCAGGAACAGCTCTGGGCTCAGAGTCCACAAAAGGATCCACACGGGGGAGAAGCCC
TATGAATGCGACATCTGTGGGAAAACCTTCAGTAACAGCTCTGGCCTTAGGGTCCATAAAAGGATCCACA
CAGGTGAGAAACCTTACGAATGTGATGAGTGTGGGAAGGCCTTCATTACTTGTAGAACACTTCTCAACCA
TAAAAGCATCCACTTTGGAGATAAACCCTATAAATGTGATGAGTGTGAGAAATCTTTTAATTATAGCTCT
CTTCTCATTCAGCATAAAGTCATCCACACTGGAGAGAAACCTTATGAATGTGATGAATGTGGGAAGGCTT
TCAGGAACAGCTCAGGCCTCATAGTGCATAAAAGGATCCACACAGGAGAGAAACCTTACAAGTGTGATGT
CTGTGGCAAAGCATTCAGCTATAGCTCAGGCCTCGCAGTCCATAAAAGCATTCACCCTGGGAAGAAAGCC
CATGAATGTAAGGAGTGTGGGAAATCCTTTAGTTATAACTCACTACTTCTTCAACACAGAACTATTCATA
CCGGAGAGAGACCTTATGTATGTGATGTGTGTGGGAAAACGTTCAGAAACAATGCAGGCCTCAAAGTCCA
CAGGAGGCTCCATACTGGGGAAAAACCATATAAGTGTGATGTGTGTGGGAAAGCCTATATCTCACGCTCT
AGCCTTAAAAATCACAAAGGAATCCACCTTGGGGAGAAGCCCTATAAATGTAGCTATTGTGAGAAATCCT
TCAACTACAGCTCTGCCCTTGAACAGCATAAAAGGATTCATACCAGGGAAAAACCCTTTGGGTGTGATGA
GTGTGGTAAAGCTTTCAGAAATAATTCTGGCCTTAAAGTACATAAACGAATCCACACTGGGGAACGACCT
TACAAATGTGAAGAATGTGGGAAAGCATACATCTCTCTCTCGAGCCTTATAAATCATAAAAGTGTACACC
CTGGGGAGAAGCCCTTTAAGTGTGACGAGTGTGAGAAGGCCTTCATCACATACCGAACCCTTACAAACCA
CAAAAAAGTTCATCTTGGGGAGAAGCCCTACAAATGTGATGTGTGTGAGAAATCTTTTAATTACACATCG
CTCCTTTCTCAGCACAGAAGGGTCCACACTAGAGAGAAACCCTATGAATGTGACAGGTGTGAGAAGGTCT
TCAGAAACAACTCAAGCCTTAAAGTTCATAAAAGAATCCATACTGGGGAGAGGCCCTATGAATGTGATGT
GTGTGGAAAAGCCTACATCTCACACTCAAGCCTTATTAACCATAAGAGTACCCACCCTGGCAGGACACCC
CATACATGTGATGAATGTGGAAAAGCTTTTTTCTCAAGCAGAACTCTTATAAGCCATAAAAGAGTCCATC
TTGGGGAGAAACCCTTCAAGTGTGTTGAGTGTGGGAAATCTTTCAGTTACAGCTCTCTCCTTTCTCAGCA
CAAGAGGATCCACACAGGGGAGAAACCCTATGTGTGTGATAGGTGTGGGAAGGCCTTCAGGAACAGCTCA
GGCCTCACAGTGCATAAAAGGATCCACACAGGTGAGAAACCCTATGAATGTGATGAGTGTGGGAAGGCAT
ACATCTCACACTCAAGTCTTATCAATCATAAAAGTGTCCACCAGGGGAAGCAGCCCTATAATTGTGAGTG
TGGGAAATCCTTCAATTATAGATCAGTCCTTGACCAGCACAAAAGGATCCACACTGGAAAGAAGCCATAC
CGATGTAATGAGTGTGGTAAGGCTTTTAATATCAGATCAAATCTCACCAAGCATAAAAGAACCCATACTG
GAGAGGAATCTTTAAATGTGATATATGTGGGAAGTTATAGTGGCACATCCCAGAAGAGAACCTATGAGGG
AGGGAATGCCCTGGATGGGGGCAGGATGAGGATGCCTCTGTAG

Translation (900 aa):
MSHLKTSTEDEEPTEEYENVGNAASKWPKVEDPMPESKVGDTCVWDSKVENQQKKPVENRMKEDKSSIRE
AISKAKSTANIKTEQEGEASEKSLHLSPQHITHQTMPIGQRGSEQGKRVENINGTSYPSLQQKTNAVKKL
HKCDECGKSFKYNSRLVQHKIMHTGEKRYECDDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYS
SLINHKSTHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKP
YECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSS
LLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLAVHKSIHPGKKA
HECKECGKSFSYNSLLLQHRTIHTGERPYVCDVCGKTFRNNAGLKVHRRLHTGEKPYKCDVCGKAYISRS
SLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERP
YKCEECGKAYISLSSLINHKSVHPGEKPFKCDECEKAFITYRTLTNHKKVHLGEKPYKCDVCEKSFNYTS
LLSQHRRVHTREKPYECDRCEKVFRNNSSLKVHKRIHTGERPYECDVCGKAYISHSSLINHKSTHPGRTP
HTCDECGKAFFSSRTLISHKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYVCDRCGKAFRNSS
GLTVHKRIHTGEKPYECDECGKAYISHSSLINHKSVHQGKQPYNCECGKSFNYRSVLDQHKRIHTGKKPY
RCNECGKAFNIRSNLTKHKRTHTGEESLNVIYVGSYSGTSQKRTYEGGNALDGGRMRMPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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