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Report for CCDS34077.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34077.2 Public Homo sapiens 4 SH3D19 24 110 108 CCDS HistoryNCBI Gene:152503Re-query CCDS DB by CCDS ID:34077.2Re-query CCDS DB by GeneID:152503See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 34077.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 34077.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304527.8 ENSP00000302913.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000304527.8Link to Ensembl Protein Viewer:ENSP00000302913.4Re-query CCDS DB by Nucleotide ID:ENST00000304527Re-query CCDS DB by Protein ID:ENSP00000302913
Original member Current member EBI ENST00000409252.6 ENSP00000386848.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409252.6Link to Ensembl Protein Viewer:ENSP00000386848.2Re-query CCDS DB by Nucleotide ID:ENST00000409252Re-query CCDS DB by Protein ID:ENSP00000386848
Original member Current member NCBI NM_001009555.4 NP_001009555.3 Accepted alive Link to Nucleotide Sequence:NM_001009555.4Link to Protein Sequence:NP_001009555.3Re-query CCDS DB by Nucleotide ID:NM_001009555Re-query CCDS DB by Protein ID:NP_001009555Link to BLAST:NP_001009555.3
Original member Current member NCBI NM_001378126.1 NP_001365055.1 Accepted alive Link to Nucleotide Sequence:NM_001378126.1Link to Protein Sequence:NP_001365055.1Re-query CCDS DB by Nucleotide ID:NM_001378126Re-query CCDS DB by Protein ID:NP_001365055Link to BLAST:NP_001365055.1
Original member Current member NCBI NM_001378127.1 NP_001365056.1 Accepted alive Link to Nucleotide Sequence:NM_001378127.1Link to Protein Sequence:NP_001365056.1Re-query CCDS DB by Nucleotide ID:NM_001378127Re-query CCDS DB by Protein ID:NP_001365056Link to BLAST:NP_001365056.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009555.3 790 Q5HYK7-1 790 100% 0 0
NP_001365055.1 790 Q5HYK7-1 790 100% 0 0
NP_001365056.1 790 Q5HYK7-1 790 100% 0 0

Chromosomal Locations for CCDS 34077.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 151122091 151122207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151127618 151127715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151128170 151128356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151132331 151132383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151133034 151133236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151135074 151135132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151137732 151137862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151139775 151139847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151143910 151144050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151144220 151144288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151147922 151148186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151149500 151149561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151159240 151159352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151165589 151165696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151174670 151175363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGAACATTATGAACACAGAACAAAGCCAAAATAGTATTGTTTCCAGAATTAAAGTGTTTGAGGGTCAGA
CAAACATAGAAACCTCAGGACTGCCCAAGAAACCAGAAATTACTCCACGTTCACTTCCTCCAAAGCCTAC
TGTTTCCTCAGGGAAACCTTCTGTAGCTCCCAAACCAGCTGCTAACAGAGCTTCTGGAGAGTGGGACTCT
GGGACTGAGAACAGACTCAAGGTGACCTCCAAGGAAGGACTCACCCCATACCCTCCCCTGCAAGAAGCGG
GAAGCATCCCAGTAACCAAACCTGAATTGCCAAAGAAACCAAACCCTGGCCTTATACGAAGTGTTAATCC
TGAGATTCCGGGAAGAGGGCCCCTGGCTGAGAGCTCTGATAGTGGGAAGAAAGTGCCAACTCCTGCCCCG
CGGCCTTTGCTGCTGAAGAAATCTGTTTCCTCAGAAAACCCCACCTACCCTTCAGCTCCACTGAAACCTG
TCACTGTTCCTCCCCGACTCGCAGGGGCATCACAAGCCAAAGCATACAAGTCACTGGGAGAAGGGCCCCC
AGCCAACCCCCCAGTTCCAGTTCTGCAGAGCAAGCCCTTGGTGGACATCGATCTCATCAGCTTTGATGAT
GATGTTTTGCCCACCCCATCGGGGAACCTGGCTGAAGAATCTGTTGGTTCAGAGATGGTTCTAGATCCCT
TTCAGCTCCCTGCAAAAACAGAACCAATAAAAGAACGAGCAGTTCAACCAGCACCCACCAGGAAGCCCAC
TGTAATTCGAATTCCAGCCAAACCAGGAAAATGTTTACATGAGGATCCACAAAGTCCACCTCCTCTCCCT
GCTGAAAAACCTATTGGAAACACTTTCAGTACAGTATCTGGAAAGCTCAGTAATGTTGAGAGAACTAGAA
ACTTGGAATCCAACCACCCAGGTCAAACAGGAGGTTTTGTGCGAGTACCCCCAAGGTTGCCACCGAGACC
TGTGAATGGAAAAACCATTCCAACTCAACAGCCTCCAACCAAGGTGCCCCCTGAGAGACCACCTCCCCCA
AAGCTTTCTGCAACCAGAAGATCTAATAAGAAACTGCCTTTTAATCGATCCTCTTCTGACATGGATCTTC
AGAAAAAACAAAGTAACTTGGCAACTGGACTCTCAAAAGCCAAGAGTCAAGTTTTTAAAAATCAAGATCC
GGTGCTACCCCCTCGTCCCAAACCAGGACACCCTCTCTACAGTAAATACATGCTGTCTGTGCCTCATGGA
ATTGCCAATGAAGATATTGTCTCTCAAAACCCCGGAGAACTCTCTTGTAAGCGTGGGGATGTACTTGTGA
TGCTGAAGCAGACGGAAAATAATTACTTGGAGTGCCAAAAGGGAGAAGACACTGGCAGAGTTCACCTGTC
TCAAATGAAGATTATCACTCCACTTGATGAACATCTTAGAAGCAGACCAAACGATCCAAGCCACGCTCAG
AAGCCTGTTGACAGTGGTGCTCCTCATGCTGTCGTTCTTCATGATTTCCCAGCAGAGCAAGTTGATGATT
TGAACCTCACTTCTGGAGAAATTGTTTATCTTCTGGAGAAGATAGATACAGATTGGTACAGAGGGAACTG
TAGAAACCAGATTGGCATATTTCCTGCCAACTATGTCAAAGTGATTATTGATATCCCAGAAGGAGGAAAT
GGGAAAAGAGAATGTGTTTCATCTCATTGTGTTAAAGGCTCAAGATGTGTTGCTCGGTTTGAATATATTG
GAGAGCAGAAGGATGAGTTGAGTTTCTCAGAGGGAGAAATTATTATTCTTAAAGAGTATGTGAATGAGGA
ATGGGCCAGAGGAGAAGTTCGAGGCAGAACTGGGATTTTCCCCCTGAACTTTGTGGAGCCTGTTGAGGAT
TATCCCACCTCTGGTGCAAATGTTTTAAGCACAAAGGTACCACTGAAAACCAAAAAAGAAGATTCTGGCT
CAAACTCTCAGGTTAACAGTCTTCCGGCAGAATGGTGTGAAGCTCTTCACAGTTTTACAGCAGAGACCAG
TGATGACTTATCATTCAAGAGGGGAGACCGGATCCAGATTCTGGAACGTCTGGATTCTGACTGGTGCAGG
GGCAGACTGCAGGACAGGGAGGGGATCTTCCCAGCAGTGTTTGTGAGGCCCTGCCCAGCTGAGGCAAAAA
GTATGTTGGCCATAGTACCGAAGGGGAGGAAGGCCAAAGCCTTATATGATTTCCGAGGGGAGAATGAAGA
TGAACTTTCCTTCAAGGCTGGAGATATAATAACAGAGCTGGAATCTGTAGATGATGACTGGATGAGTGGA
GAACTTATGGGAAAATCTGGAATATTTCCCAAAAACTACATACAGTTTCTACAGATCAGCTAG

Translation (790 aa):
MNIMNTEQSQNSIVSRIKVFEGQTNIETSGLPKKPEITPRSLPPKPTVSSGKPSVAPKPAANRASGEWDS
GTENRLKVTSKEGLTPYPPLQEAGSIPVTKPELPKKPNPGLIRSVNPEIPGRGPLAESSDSGKKVPTPAP
RPLLLKKSVSSENPTYPSAPLKPVTVPPRLAGASQAKAYKSLGEGPPANPPVPVLQSKPLVDIDLISFDD
DVLPTPSGNLAEESVGSEMVLDPFQLPAKTEPIKERAVQPAPTRKPTVIRIPAKPGKCLHEDPQSPPPLP
AEKPIGNTFSTVSGKLSNVERTRNLESNHPGQTGGFVRVPPRLPPRPVNGKTIPTQQPPTKVPPERPPPP
KLSATRRSNKKLPFNRSSSDMDLQKKQSNLATGLSKAKSQVFKNQDPVLPPRPKPGHPLYSKYMLSVPHG
IANEDIVSQNPGELSCKRGDVLVMLKQTENNYLECQKGEDTGRVHLSQMKIITPLDEHLRSRPNDPSHAQ
KPVDSGAPHAVVLHDFPAEQVDDLNLTSGEIVYLLEKIDTDWYRGNCRNQIGIFPANYVKVIIDIPEGGN
GKRECVSSHCVKGSRCVARFEYIGEQKDELSFSEGEIIILKEYVNEEWARGEVRGRTGIFPLNFVEPVED
YPTSGANVLSTKVPLKTKKEDSGSNSQVNSLPAEWCEALHSFTAETSDDLSFKRGDRIQILERLDSDWCR
GRLQDREGIFPAVFVRPCPAEAKSMLAIVPKGRKAKALYDFRGENEDELSFKAGDIITELESVDDDWMSG
ELMGKSGIFPKNYIQFLQIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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