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Report for CCDS8271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8271.1 Public Homo sapiens 11 CCDC83 24 110 108 CCDS HistoryNCBI Gene:220047Re-query CCDS DB by CCDS ID:8271.1Re-query CCDS DB by GeneID:220047See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8271.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280245.8 ENSP00000280245.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000280245.8Link to Ensembl Protein Viewer:ENSP00000280245.4Re-query CCDS DB by Nucleotide ID:ENST00000280245Re-query CCDS DB by Protein ID:ENSP00000280245
Original member Current member NCBI NM_173556.5 NP_775827.2 Accepted alive Link to Nucleotide Sequence:NM_173556.5Link to Protein Sequence:NP_775827.2Re-query CCDS DB by Nucleotide ID:NM_173556Re-query CCDS DB by Protein ID:NP_775827Link to BLAST:NP_775827.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775827.2 444 Q8IWF9-2 444 100% 0 0

Chromosomal Locations for CCDS 8271.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 85865124 85865218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85873211 85873295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85882513 85882675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85886200 85886367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85895293 85895384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85898947 85899015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85911281 85911402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85912649 85912741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85915419 85915498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85916028 85916233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85919349 85919510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGGAAAACTCAGGGAAAGCAAATAAAAAGGATACACATGACGGGCCACCAAAAGAAATTAAACTGCCTA
CCAGTGAAGCACTTCTAGACTATCAATGTCAAATAAAGGAAGATGCCGTGGAGCAATTCATGTTTCAAAT
AAAGACACTTAGGAAAAAGAACCAAAAATATCATGAAAGAAATAGCCGCTTAAAAGAAGAACAGATTTGG
CACATACGGCATCTACTAAAGGAACTGAGTGAAGAGAAGGCAGAGGGATTGCCAGTTGTAACAAGAGAGG
ATGTTGAAGAAGCGATGAAGGAAAAATGGAAGTTTGAAAGAGACCAGGAAAAAAACTTGAGAGATATGCG
CATGCAAATAAGTAATGCTGAGAAACTATTTCTTGAGAAACTCAGTGAAAAGGAATATTGGGAGGAGTAC
AAGAATGTAGGGAGTGAACGACATGCTAAACTCATTACCTCCTTACAAAATGACATCAACACAGTTAAAG
AGAATGCAGAGAAAATGTCAGAACACTATAAAATCACTCTGGAAGATACTAGAAAGAAAATAATCAAGGA
AACTTTGTTGCAACTGGACCAAAAGAAGGAATGGGCCACACAGAATGCTGTAAAGCTCATTGACAAGGGC
AGTTATCTAGAGATCTGGGAGAATGACTGGCTCAAAAAAGAGGTTGCAATTCACAGGAAGGAAGTTGAAG
AATTAAAAAATGCTATTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTATCCAACTGTAG
ACTTGTGGATCTCAAGATACCCAGGTATCCAGTGCTACATTCCTGTCCCACCTCTAATCCTCGTCATCTG
CTGCTGCTGCCTTTGGAATCATGTCTAATCTCTGCCAGGCGTTGCTGGCGACTATATCTTACCCAAGCTG
CTGGACTAGAAGTGCCACCTGAAGAAATGTCTTTGGAATTGCCAGAAACACATATAGAAGAGAAGTCAGA
ATTGCAACCCACAGAAGTAGAAAGTAGAGACTTGATGTCCTCATCAGATGAGAGCACTATCTTACATCTT
AGTCATGAAAATAGCATCGAAGATCTCCAGTATGTGAAGATAGATAAAGAGGAAAACTCAGGCACAGAGT
TTGGGGACACTGATATGAAGTACTTACTATATGAGGATGAGAAGGATTTCAAGGATTATGTAAACTTGGG
CCCCCTGGGAGTGAAGCTTATGAGTGTGGAGAGCAAGAAAATGCCCATTCATTTTCAAGAGAAGGAAATT
CCAGTCAAACTCTATAAAGATGTCAGGAGCCCAGAAAGCCACATCACATATAAGATGATGAAGTCTTTTC
TCTAA

Translation (444 aa):
MENSGKANKKDTHDGPPKEIKLPTSEALLDYQCQIKEDAVEQFMFQIKTLRKKNQKYHERNSRLKEEQIW
HIRHLLKELSEEKAEGLPVVTREDVEEAMKEKWKFERDQEKNLRDMRMQISNAEKLFLEKLSEKEYWEEY
KNVGSERHAKLITSLQNDINTVKENAEKMSEHYKITLEDTRKKIIKETLLQLDQKKEWATQNAVKLIDKG
SYLEIWENDWLKKEVAIHRKEVEELKNAIHELEAENLVLIDQLSNCRLVDLKIPRYPVLHSCPTSNPRHL
LLLPLESCLISARRCWRLYLTQAAGLEVPPEEMSLELPETHIEEKSELQPTEVESRDLMSSSDESTILHL
SHENSIEDLQYVKIDKEENSGTEFGDTDMKYLLYEDEKDFKDYVNLGPLGVKLMSVESKKMPIHFQEKEI
PVKLYKDVRSPESHITYKMMKSFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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