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Report for CCDS42103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42103.1 Public Homo sapiens 16 CASKIN1 24 110 108 CCDS HistoryNCBI Gene:57524Re-query CCDS DB by CCDS ID:42103.1Re-query CCDS DB by GeneID:57524See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42103.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343516.8 ENSP00000345436.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343516.8Link to Ensembl Protein Viewer:ENSP00000345436.6Re-query CCDS DB by Nucleotide ID:ENST00000343516Re-query CCDS DB by Protein ID:ENSP00000345436
Original member Current member NCBI NM_020764.4 NP_065815.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020764.4Link to Protein Sequence:NP_065815.1Re-query CCDS DB by Nucleotide ID:NM_020764Re-query CCDS DB by Protein ID:NP_065815Link to BLAST:NP_065815.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065815.1 1431 Q8WXD9 1431 100% 0 0

Chromosomal Locations for CCDS 42103.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 2178550 2178646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2178902 2179325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2179593 2181599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2181791 2181929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2183646 2183747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2183831 2183941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2184777 2184868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2184951 2185035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2185111 2185199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2185307 2185408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2186707 2186824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2186978 2187072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2187166 2187274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2187353 2187461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2189027 2189157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2189238 2189333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2189419 2189564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2190073 2190170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2190307 2190358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2196339 2196432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4296 nt):
ATGGGGAAGGAGCAGGAGCTGGTGCAGGCGGTGAAGGCGGAGGACGTAGGGACCGCGCAGAGGCTGCTGC
AGAGGCCGCGGCCCGGGAAGGCCAAGCTCCTGGGTTCCACCAAGAAGATCAATGTCAACTTCCAGGACCC
GGATGGCTTCTCGGCTCTGCACCATGCGGCCCTGAACGGCAACACGGAATTGATCAGCCTGCTGCTGGAG
GCCCAGGCCGCTGTGGACATCAAGGACAACAAAGGCATGCGGCCGCTGCACTATGCGGCCTGGCAGGGCC
GGAAGGAGCCCATGAAGCTGGTGCTGAAGGCGGGCTCGGCCGTGAACATCCCGTCTGATGAGGGCCACAT
CCCCCTGCACCTGGCGGCCCAGCATGGTCACTATGATGTGTCTGAGATGCTGCTACAGCACCAGTCTAAC
CCGTGCATGGTGGACAACTCGGGGAAGACGCCCCTGGACCTGGCCTGCGAGTTCGGCCGCGTTGGGGTGG
TCCAGCTGCTCCTCAGCAGCAATATGTGTGCGGCGCTGCTGGAGCCCCGGCCGGGAGACGCCACCGACCC
CAACGGCACCAGCCCTTTGCACCTCGCAGCTAAAAACGGCCACATCGACATCATCAGGCTCCTCCTCCAA
GCCGGCATCGACATTAACCGCCAGACCAAGTCCGGCACGGCCCTGCACGAGGCTGCGCTCTGCGGAAAGA
CAGAGGTGGTGCGGCTGCTGCTGGATAGCGGGATCAATGCCCACGTGAGGAACACCTACAGCCAGACAGC
CCTGGACATCGTGCACCAGTTCACCACGTCCCAGGCCAGCAGGGAGATCAAGCAGCTGTTGCGAGAGGCC
TCAGCGGCCCTGCAGGTCCGGGCGACCAAGGATTATTGCAACAATTACGACCTGACCAGCCTCAACGTGA
AGGCAGGGGACATCATCACAGTCCTCGAGCAGCATCCGGATGGCCGGTGGAAGGGCTGCATCCATGACAA
CCGGACGGGCAATGACCGGGTGGGCTACTTCCCGTCCTCCCTGGGCGAGGCCATTGTCAAGCGAGCAGGT
TCCCGAGCAGGCACTGAACCAAGCCTGCCCCAGGGAAGCAGCTCATCGGGACCCTCTGCACCCCCAGAGG
AGATCTGGGTGCTGAGGAAGCCTTTTGCAGGTGGGGACCGAAGCGGCAGCATTAGCGGCATGGCTGGCGG
CCGGGGCAGCGGGGGTCACGCCCTACACGCGGGCTCTGAAGGCGTCAAGCTCCTGGCAACGGTGCTTTCC
CAGAAGTCCGTCTCTGAGTCCGGCCCGGGGGACAGCCCCGCCAAGCCTCCGGAAGGCTCTGCAGGTGTGG
CCCGGTCCCAGCCTCCAGTGGCCCACGCCGGGCAGGTCTATGGGGAGCAGCCGCCCAAGAAGCTGGAGCC
AGCATCGGAGGGCAAGAGCTCTGAGGCCGTGAGCCAGTGGCTCACCGCGTTCCAGCTGCAGCTCTACGCC
CCCAACTTCATCAGCGCCGGCTACGACCTGCCCACCATCAGCCGCATGACTCCCGAGGACCTCACGGCCA
TTGGTGTCACCAAGCCGGGCCACCGGAAGAAGATCGCGGCAGAGATCAGCGGCCTAAGCATCCCTGACTG
GCTGCCTGAGCACAAACCCGCTAACCTGGCCGTGTGGCTGTCCATGATCGGCCTGGCCCAGTACTACAAG
GTGTTGGTGGACAATGGCTACGAGAACATTGATTTCATCACCGACATCACCTGGGAGGACCTGCAGGAGA
TCGGCATCACCAAGCTGGGGCACCAGAAGAAGCTGATGCTCGCTGTGAGGAAGCTGGCAGAGCTGCAGAA
GGCTGAATACGCCAAGTATGAGGGGGGCCCCCTGCGCCGGAAGGCGCCCCAGTCTCTTGAAGTGATGGCC
ATCGAGTCGCCGCCCCCGCCTGAGCCCACACCGGCCGACTGCCAGTCCCCTAAAATGACCACCTTCCAGG
ACAGCGAGCTCAGTGACGAGCTGCAGGCTGCCATGACTGGCCCGGCTGAGGTGGGGCCCACCACTGAGAA
GCCCTCCAGCCACCTGCCACCCACCCCGAGGGCCACCACGCGGCAGGACTCCAGCCTGGGTGGTCGGGCA
CGGCACATGAGCAGCTCGCAGGAGCTGCTGGGAGATGGGCCCCCTGGGCCCAGCAGCCCCATGTCTCGAA
GCCAGGAGTACCTCCTGGATGAGGGCCCCGCCCCCGGCACCCCGCCCAGGGAGGCCCGGCCCGGCCGCCA
CGGCCACAGCATCAAGAGGGCCAGCGTGCCCCCCGTGCCTGGCAAGCCACGGCAGGTCCTCCCACCAGGC
ACTAGCCACTTCACGCCCCCCCAGACGCCCACCAAAACCCGACCAGGCTCTCCCCAGGCCCTTGGGGGAC
CTCATGGTCCAGCCCCAGCTACGGCCAAGGTGAAGCCCACCCCGCAGCTGCTGCCGCCGACAGAGCGCCC
CATGTCACCCCGCTCCCTGCCTCAGTCACCGACGCACCGCGGCTTTGCCTACGTGCTGCCCCAGCCCGTG
GAGGGCGAGGTGGGGCCGGCTGCCCCGGGGCCTGCGCCCCCACCCGTGCCGACGGCTGTGCCCACACTGT
GCCTGCCCCCTGAGGCCGACGCGGAGCCGGGGCGGCCCAAGAAGCGGGCCCACAGCCTGAATCGCTATGC
GGCGTCCGACAGCGAGCCGGAGCGGGACGAGCTGCTGGTGCCTGCGGCTGCCGGCCCCTATGCCACGGTC
CAGCGGCGCGTGGGCCGCAGCCACTCAGTGAGGGCGCCCGCAGGTGCCGACAAGAACGTCAACCGCAGCC
AGTCCTTTGCCGTGCGGCCCCGAAAGAAGGGGCCCCCGCCGCCCCCACCCAAGCGCTCCAGCTCGGCCCT
GGCTAGTGCCAACCTGGCGGATGAGCCGGTGCCTGACGCCGAGCCTGAGGATGGCCTGCTGGGGGTCCGG
GCACAGTGCCGGCGGGCCAGTGACCTGGCCGGCAGCGTGGACACGGGTAGTGCCGGCAGTGTGAAGAGCA
TCGCGGCCATGCTGGAGCTGTCCTCCATTGGGGGTGGGGGCCGGGCTGCCCGCAGGCCTCCTGAGGGCCA
CCCCACTCCCCGCCCTGCCAGCCCAGAGCCGGGCCGGGTGGCCACCGTGCTGGCCTCAGTGAAACACAAA
GAGGCCATCGGGCCTGGCGGGGAGGTGGTGAACCGGCGCCGCACGCTCAGCGGGCCAGTCACCGGACTTC
TGGCCACTGCCCGCCGGGGGCCTGGGGAGTCGGCAGACCCAGGCCCCTTTGTGGAGGATGGCACTGGCCG
GCAGCGGCCTCGGGGTCCCTCCAAGGGCGAGGCGGGTGTCGAAGGCCCGCCCTTGGCCAAGGTGGAAGCC
AGCGCCACACTCAAGAGGCGCATCCGGGCCAAGCAGAACCAGCAGGAGAACGTCAAGTTCATCCTGACCG
AGTCTGACACGGTCAAGCGCAGGCCCAAGGCCAAGGAGCGGGAGGCCGGGCCTGAGCCACCACCGCCACT
GTCCGTGTACCATAATGGCACTGGCACCGTGCGCCGCCGACCGGCCTCGGAGCAGGCTGGGCCTCCGGAG
CTGCCTCCACCGCCCCCGCCTGCCGAACCCCCGCCCACCGACCTGGCGCACCTACCCCCATTGCCCCCGC
CCGAGGGCGAAGCCCGGAAGCCGGCCAAGCCGCCTGTCTCTCCCAAGCCCGTCCTGACGCAGCCTGTGCC
CAAGCTCCAGGGCTCGCCCACACCCACCTCCAAGAAGGTGCCGCTGCCAGGCCCTGGCAGCCCAGAGGTG
AAGCGCGCCCACGGCACGCCACCGCCCGTGTCTCCCAAGCCGCCGCCGCCGCCCACAGCGCCCAAGCCCG
TCAAGGCGGTCGCGGGGCTGCCTTCGGGCAGCGCCGGCCCTTCACCCGCACCCTCGCCCGCGCGACAGCC
GCCCGCCGCCCTCGCCAAGCCGCCCGGTACGCCGCCCTCGCTGGGCGCCAGCCCCGCCAAGCCCCCGTCC
CCCGGCGCGCCCGCGCTGCACGTGCCCGCCAAGCCCCCGCGAGCCGCCGCCGCCGCCGCCGCCGCCGCCG
CCGCGCCCCCCGCCCCGCCCGAAGGCGCCTCGCCAGGGGACAGCGCCCGGCAGAAACTGGAGGAGACAAG
CGCGTGCCTGGCCGCGGCGCTGCAGGCGGTGGAGGAGAAGATCCGGCAGGAGGACGCGCAGGGCCCGCGC
GACTCGGCGGCGGAAAAGAGCACTGGCAGCATCCTGGACGACATCGGCAGCATGTTCGACGACCTGGCCG
ACCAGCTGGATGCCATGCTGGAGTGA

Translation (1431 aa):
MGKEQELVQAVKAEDVGTAQRLLQRPRPGKAKLLGSTKKINVNFQDPDGFSALHHAALNGNTELISLLLE
AQAAVDIKDNKGMRPLHYAAWQGRKEPMKLVLKAGSAVNIPSDEGHIPLHLAAQHGHYDVSEMLLQHQSN
PCMVDNSGKTPLDLACEFGRVGVVQLLLSSNMCAALLEPRPGDATDPNGTSPLHLAAKNGHIDIIRLLLQ
AGIDINRQTKSGTALHEAALCGKTEVVRLLLDSGINAHVRNTYSQTALDIVHQFTTSQASREIKQLLREA
SAALQVRATKDYCNNYDLTSLNVKAGDIITVLEQHPDGRWKGCIHDNRTGNDRVGYFPSSLGEAIVKRAG
SRAGTEPSLPQGSSSSGPSAPPEEIWVLRKPFAGGDRSGSISGMAGGRGSGGHALHAGSEGVKLLATVLS
QKSVSESGPGDSPAKPPEGSAGVARSQPPVAHAGQVYGEQPPKKLEPASEGKSSEAVSQWLTAFQLQLYA
PNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKIAAEISGLSIPDWLPEHKPANLAVWLSMIGLAQYYK
VLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAELQKAEYAKYEGGPLRRKAPQSLEVMA
IESPPPPEPTPADCQSPKMTTFQDSELSDELQAAMTGPAEVGPTTEKPSSHLPPTPRATTRQDSSLGGRA
RHMSSSQELLGDGPPGPSSPMSRSQEYLLDEGPAPGTPPREARPGRHGHSIKRASVPPVPGKPRQVLPPG
TSHFTPPQTPTKTRPGSPQALGGPHGPAPATAKVKPTPQLLPPTERPMSPRSLPQSPTHRGFAYVLPQPV
EGEVGPAAPGPAPPPVPTAVPTLCLPPEADAEPGRPKKRAHSLNRYAASDSEPERDELLVPAAAGPYATV
QRRVGRSHSVRAPAGADKNVNRSQSFAVRPRKKGPPPPPPKRSSSALASANLADEPVPDAEPEDGLLGVR
AQCRRASDLAGSVDTGSAGSVKSIAAMLELSSIGGGGRAARRPPEGHPTPRPASPEPGRVATVLASVKHK
EAIGPGGEVVNRRRTLSGPVTGLLATARRGPGESADPGPFVEDGTGRQRPRGPSKGEAGVEGPPLAKVEA
SATLKRRIRAKQNQQENVKFILTESDTVKRRPKAKEREAGPEPPPPLSVYHNGTGTVRRRPASEQAGPPE
LPPPPPPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQPVPKLQGSPTPTSKKVPLPGPGSPEV
KRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAKPPS
PGAPALHVPAKPPRAAAAAAAAAAAPPAPPEGASPGDSARQKLEETSACLAAALQAVEEKIRQEDAQGPR
DSAAEKSTGSILDDIGSMFDDLADQLDAMLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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