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Report for CCDS24392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24392.1 Public Mus musculus 11 Nipsnap1 23 108 98 CCDS HistoryNCBI Gene:18082Re-query CCDS DB by CCDS ID:24392.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24392.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038570.8 ENSMUSP00000049338.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038570.8Link to Ensembl Protein Viewer:ENSMUSP00000049338.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000038570Re-query CCDS DB by Protein ID:ENSMUSP00000049338
Original member Current member NCBI NM_008698.3 NP_032724.1 Accepted alive Link to Nucleotide Sequence:NM_008698.3Link to Protein Sequence:NP_032724.1Re-query CCDS DB by Nucleotide ID:NM_008698Re-query CCDS DB by Protein ID:NP_032724Link to BLAST:NP_032724.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032724.1 284 O55125 284 100% 0 0

Chromosomal Locations for CCDS 24392.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4874006 4874103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4883368 4883495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4883726 4883771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4884022 4884116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4888880 4888950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4889097 4889237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4889533 4889564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4889892 4889986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4891403 4891486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4893120 4893184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGGCTCCGCGGTTGTGCATCATCTCTGCAGCGGCACGGCGGCTATTCACGAAGCCGAGACCCCGTGCTG
GGGACCTCGCGGCTGCGGGTGCTGTGCGCTTCTATTCCAAGGACAGTGAAGGAAGCTGGTTCCGTTCCCT
CTTTGTCCACAAGGTGGATCCTCGGAAGGACGCCCACTCCACTCTGCTGTCCAAGAAGGAGACTAGTAAT
CTCTACAAGATCCAGTTTCACAACGTGAAGCCCGAATGTCTGGATGCCTACAACAGTCTGACGGAGGCTG
TACTGCCCAAGCTGCACCTGGATGAGGACTATCCCTGCTCGCTTGTGGGCAACTGGAACACGTGGTACGG
GGAGCAGGACCAGGCAGTACACCTATGGCGGTTCTCAGGTGGCTACCCGGCCCTCATGGACTGCATGAAC
AAGCTAAAAAACAACAAGGAGTACCTGGAGTTCCGGAAGGAACGGAGCAAGATGCTGCTGTCCAGGAGAA
ACCAGTTGCTTCTGGAGTTCAGCTTCTGGAATGAGCCACAGCCCCGAGCTGGCCCCAATATCTATGAGCT
GAGGACATATAAACTCAAGCCAGGAACCATGATTGAATGGGGAAACAACTGGGCTCGGGCCATCAAGTAC
CGTCAGGAGAACCAGGAGGCGGTGGGAGGCTTCTTTTCACAAATAGGAGAGCTCTACGTGGTACACCACT
TATGGGCCTACAAAGATTTGCAATCTCGGGAGGAGACTCGAAATGCGGCCTGGAGAAAGAGGGGCTGGGA
TGAAAATGTCTACTACACAGTCCCCTTGGTTCGACACATGGAGTCACGAATCATGATTCCTCTGAAGATT
TCTCCTCTCCAGTGA

Translation (284 aa):
MAPRLCIISAAARRLFTKPRPRAGDLAAAGAVRFYSKDSEGSWFRSLFVHKVDPRKDAHSTLLSKKETSN
LYKIQFHNVKPECLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQDQAVHLWRFSGGYPALMDCMN
KLKNNKEYLEFRKERSKMLLSRRNQLLLEFSFWNEPQPRAGPNIYELRTYKLKPGTMIEWGNNWARAIKY
RQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVPLVRHMESRIMIPLKI
SPLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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