NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29186.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29186.1 Public Mus musculus 18 Pcdhb21 23 108 98 CCDS HistoryNCBI Gene:93892Re-query CCDS DB by CCDS ID:29186.1Re-query CCDS DB by GeneID:93892See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29186.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061405.5 ENSMUSP00000056424.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061405.5Link to Ensembl Protein Viewer:ENSMUSP00000056424.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000061405Re-query CCDS DB by Protein ID:ENSMUSP00000056424
Original member NCBI NM_053146.2 NP_444376.1 Updated not alive Link to Nucleotide Sequence:NM_053146.2Link to Protein Sequence:NP_444376.1Re-query CCDS DB by Nucleotide ID:NM_053146Re-query CCDS DB by Protein ID:NP_444376
Current member NCBI NM_053146.3 NP_444376.1 Accepted alive Link to Nucleotide Sequence:NM_053146.3Link to Protein Sequence:NP_444376.1Re-query CCDS DB by Nucleotide ID:NM_053146Re-query CCDS DB by Protein ID:NP_444376Link to BLAST:NP_444376.1

Chromosomal Locations for CCDS 29186.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37513820 37516144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2325 nt):
ATGGAGCCTGGAGTTGGAGCTGCTCAGCATATAAGGCAAGTGCTGCTTTTCTTTGTTTTCCTGGAAGGGT
CCTCGGTTCTTGCCACGACCTGGAGATATTCTGTGCCAGAAGAAATGGAGACTGGCTCCTCTATAGCCAA
TATAATTAAAGATATGGATGTGGGTGATCTGGCTGCACGGGGGGCCAGAGTTATATTTGATGACTACCAG
CCTTATTTGCGGTTAGAACTGGAGACTGGCAACTTGCTTTTGAATGAAAAACTGGACAGGGAGGCACTTT
GTTCTAGCAGCGAACCCTGTATATTGCATTTCCAGGTGCTATTGGAAAATCCTCTGCAATTTTTTCAGGC
TGAGCTTTTGATTGAAGACATAAATGACCATACCCCCACGTTCCTAGAAAAACTCATATTTCTAAATATC
TCAGAAAGTGCTACTCCAGGAACCTCATTCCAAATGGATGATGCTCAGGACTTAGATATAGGGATGAATG
GTATCCAAAACTATTCAATAAGCCCCAACCCCTATTTCTACCTTAAGTTAAAAGACAGTGGTAAAGGAAG
AAGATATCCAGAGCTGGTACTGGTTAGATCTCTGGACAGAGAAAAGGAGGCTTCAATTAGCTTGATACTA
ACAGCTATGGATGGTGGGTCCCTGCCCAGGTCAGGGACTGTATTGGTTCAAGTTGTGGTTCTGGATGTCA
ATGACAATGCCCCTGAGTTTGAAAGGACCCTGTATGAGGTCCAAGTACCAGAGAACAGTTCTGTGGACTC
ACTGGTAATCAAGGTGTCTGCGACAGATTTGGATTCGGGAATAAATGGAGAAATATCTTATTCGTTTTCT
CATATCTCTAGAGATGTACAAAAAACATTCGAAATCCACCCAACCTCTGGTGAAGTCCGTTTGAAAAGAC
TCCTAGATTTTGAGGTAATTCAGTCTTATACAATAAATATTCAAGCCATTGATGGTGGTGGTCTCTCTGG
AAAATCAGCCATTATTGTCCAGGTTACAGATGTGAATGACAACCCACCAGAAATAGTCATTACATCTCTT
ATGAGCTCTATCCCAGAGAACGGTTTGTCAGAGATGGTGGTCGCTGTTTTCAGTTTACGAGACCAAGACT
CTGGAGAAAATGGGAGAATGATGTGTTCAATTGAAGACAAACTCCCTTTTCTCTTGAAACCTACTTTCAA
AAATTTCTACACTCTAGTAACAGAGCATCCACTGGACAGAGAGAGCAGAGCTGAGTACAACATCACCGTC
ATGATCTCCGACCTGGGCACACCCAGGCTCACAACCCAGCACACCATAACAGTGCACATCTCTGACATCA
ACGACAACGCCCCTGCCTTCACCCAAACCACCTACACCATGTTCGTCCGGGAGAACAACAGCCCAGCCCT
GCACATAGGCACCATCAGCGCCACAGACTCAGATTTAGGCTCCAATGCCCACATCACCTACTCACTGCTG
CCACCCCAAGACCAGCGGCTGGCCCTCACCTCGCTAATCTCCATCAACGCTGACAACGGGCAGTTGTTTG
CGCTAAGGGCGCTGGACTATGAAACCCTACAGGCCTTCGAGTTCCGCGTGGGTGCCACGGACCGAGGCTC
ACCCGCGCTCAGCAGCCAGGCGCTGGTGCGCGTGGTGGTGCTGGACGACAATGACAATGCGCCCTTCGTG
CTCTACCCGATGCAGAACGCTTCTGCGCCCTGCACAGAGCTGCTGCCCAGGGCAGCGGAGCCCGGCTACC
TGGTCACCAAGGTGGTGGCTGTGGATCGCGACTCTGGCCAGAATGCCTGGCTGTCGTTCCAGCTACTCAA
GGCCACGGAGCCTGGGCTGTTCAGCGTGTGGGCTCACAATGGAGAGGTGCGCACTACCAGATTGCTGAGC
GAGCGCGATGTGCCCAAGCACAGGCTGCTGCTGCTAGTCAAGGACAATGGCGATCCTCCGCGCTCTGCCA
GCGTCACGCTGCACCTGTTGGTGGTGGATGGCTTCTCTCAGCCCTACCTACCTCTGCCAGAGGTTGCGCA
CGACTCTACCCAAGTGGATGAGGAAGCGCTCACACTCTATTTGGTCATTGCCTTGGCGTCTGTGTCTTCG
CTCTTCCTCTTGTCTGTGCTACTGTTCGTGGGGGTGAGGCTGTGCAGGAGGGCCAGGGCGGCCTCTCTGA
GTGGCTACTCTGAACCTGATGGACACTTCTCCGGCCACCTGGTGGATGTCAGCGGTGCGGGAACCCTGTC
CCAGAGCTATCAGTATGAGGTGTGTCTGACAGGAATGTCAGATTCCAATGATATTCGGTTCCTAAAGCCT
GTCTCCCAACCTTGA

Translation (774 aa):
MEPGVGAAQHIRQVLLFFVFLEGSSVLATTWRYSVPEEMETGSSIANIIKDMDVGDLAARGARVIFDDYQ
PYLRLELETGNLLLNEKLDREALCSSSEPCILHFQVLLENPLQFFQAELLIEDINDHTPTFLEKLIFLNI
SESATPGTSFQMDDAQDLDIGMNGIQNYSISPNPYFYLKLKDSGKGRRYPELVLVRSLDREKEASISLIL
TAMDGGSLPRSGTVLVQVVVLDVNDNAPEFERTLYEVQVPENSSVDSLVIKVSATDLDSGINGEISYSFS
HISRDVQKTFEIHPTSGEVRLKRLLDFEVIQSYTINIQAIDGGGLSGKSAIIVQVTDVNDNPPEIVITSL
MSSIPENGLSEMVVAVFSLRDQDSGENGRMMCSIEDKLPFLLKPTFKNFYTLVTEHPLDRESRAEYNITV
MISDLGTPRLTTQHTITVHISDINDNAPAFTQTTYTMFVRENNSPALHIGTISATDSDLGSNAHITYSLL
PPQDQRLALTSLISINADNGQLFALRALDYETLQAFEFRVGATDRGSPALSSQALVRVVVLDDNDNAPFV
LYPMQNASAPCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLLS
ERDVPKHRLLLLVKDNGDPPRSASVTLHLLVVDGFSQPYLPLPEVAHDSTQVDEEALTLYLVIALASVSS
LFLLSVLLFVGVRLCRRARAASLSGYSEPDGHFSGHLVDVSGAGTLSQSYQYEVCLTGMSDSNDIRFLKP
VSQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH