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Report for CCDS19471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19471.1 Public Mus musculus 5 Nkx6-1 23 108 98 CCDS HistoryNCBI Gene:18096Re-query CCDS DB by CCDS ID:19471.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19471.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044125.10 ENSMUSP00000042716.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044125.10Link to Ensembl Protein Viewer:ENSMUSP00000042716.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000044125Re-query CCDS DB by Protein ID:ENSMUSP00000042716
Original member Current member NCBI NM_144955.2 NP_659204.1 Accepted alive Link to Nucleotide Sequence:NM_144955.2Link to Protein Sequence:NP_659204.1Re-query CCDS DB by Nucleotide ID:NM_144955Re-query CCDS DB by Protein ID:NP_659204Link to BLAST:NP_659204.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659204.1 365 Q99MA9 365 100% 0 0

Chromosomal Locations for CCDS 19471.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 101659417 101659668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 101661834 101662006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 101663562 101664234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGTTAGCTGTGGGGGCGATGGAGGGCCCTCGGCAGAGCGCGTTCCTGCTCAGCAGCCCGCCCCTGGCCG
CCCTGCACAGTATGGCCGAGATGAAGACCCCGCTCTACCCCGCCGCTTATCCCCCGCTGCCCACCGGGCC
CCCCTCCTCCTCGTCCTCGTCCTCCTCGTCCTCGTCGCCCTCCCCACCTTTGGGCTCACATAACCCGGGC
GGCTTGAAGCCCCCGGCCGCGGGGGGCCTCTCGTCCCTGGGCAGTCCCCCGCAGCAGCTTTCGGCGGCCA
CCCCACACGGCATCAACGACATCCTGAGCCGGCCCTCTATGCCGGTGGCCTCGGGGGCCGCCCTGCCCTC
CGCCTCGCCCTCCGGGTCTTCCTCCTCCTCCTCCTCGTCCGCCTCCGCCACCTCGGCCTCTGCGGCGGCC
GCCGCCGCCGCTGCTGCTGCCGCCGCTGCCGCCTCGTCGCCCGCTGGGCTGCTGGCCGGCCTGCCCCGCT
TCAGCAGCCTGAGCCCTCCGCCACCGCCGCCCGGGCTCTACTTTAGCCCCAGCGCCGCGGCTGTGGCCGC
CGTGGGCCGGTACCCCAAGCCCCTGGCCGAGCTGCCCGGTCGGACGCCCATCTTCTGGCCCGGAGTGATG
CAGAGTCCGCCGTGGAGGGACGCGCGCCTTGCCTGTACCCCCCATCAAGGATCCATTTTGTTGGACAAAG
ATGGGAAGAGAAAACACACCAGACCCACGTTCTCTGGACAGCAAATCTTCGCCCTGGAGAAGACTTTCGA
ACAAACGAAGTACTTGGCAGGACCAGAGAGAGCACGCTTGGCCTATTCTCTGGGGATGACGGAGAGTCAG
GTCAAGGTCTGGTTCCAGAACCGCAGGACCAAGTGGAGAAAGAAGCACGCAGCCGAGATGGCCACGGCCA
AGAAGAAGCAGGACTCGGAGACCGAGAGGCTCAAGGGGACTTCGGAGAATGAGGAGGATGACGACGATTA
CAACAAACCTCTGGACCCGAACTCTGACGACGAGAAAATCACTCAGCTGCTGAAAAAGCACAAATCGAGC
GGTGGCAGCCTCCTGCTGCACGCGTCGGAGGCCGAGGGCTCGTCCTGA

Translation (365 aa):
MLAVGAMEGPRQSAFLLSSPPLAALHSMAEMKTPLYPAAYPPLPTGPPSSSSSSSSSSSPSPPLGSHNPG
GLKPPAAGGLSSLGSPPQQLSAATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASATSASAAA
AAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRYPKPLAELPGRTPIFWPGVM
QSPPWRDARLACTPHQGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQ
VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGTSENEEDDDDYNKPLDPNSDDEKITQLLKKHKSS
GGSLLLHASEAEGSS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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