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Report for CCDS35961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35961.1 Public Mus musculus 10 Rrp1 23 108 98 CCDS HistoryNCBI Gene:18114Re-query CCDS DB by CCDS ID:35961.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062678.10 ENSMUSP00000058785.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062678.10Link to Ensembl Protein Viewer:ENSMUSP00000058785.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000062678Re-query CCDS DB by Protein ID:ENSMUSP00000058785
Original member NCBI NM_010925.2 NP_035055.2 Updated not alive Link to Nucleotide Sequence:NM_010925.2Link to Protein Sequence:NP_035055.2Re-query CCDS DB by Nucleotide ID:NM_010925Re-query CCDS DB by Protein ID:NP_035055
Current member NCBI NM_010925.3 NP_035055.2 Accepted alive Link to Nucleotide Sequence:NM_010925.3Link to Protein Sequence:NP_035055.2Re-query CCDS DB by Nucleotide ID:NM_010925Re-query CCDS DB by Protein ID:NP_035055Link to BLAST:NP_035055.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035055.2 494 P56183-1 494 100% 0 0

Chromosomal Locations for CCDS 35961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78400794 78400984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78401850 78401966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78402425 78402444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78402610 78402707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78403505 78403584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78404925 78405286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78405415 78405479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78405566 78405695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78408413 78408474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78409134 78409219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78410966 78411023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78411404 78411486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78412820 78412952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGGTTCCCGGAGTGCCGCTCCCGCCGGAGATCCAGCTGGCGCAGCGCCTGGCGGGCAATGAACAGGTGA
CGCGGGACCGCGCGTTGCGGAAGCTGCGGAAGTACATCGAGGCCAGGTCGCAGCGGGCGACAGGTGGTTT
CACTCCAGATGAACTGCTAAAAGTATGGAAAGGACTGTTTTACTGCATGTGGATGCAGGACAAGCCCCTC
CAGCAGGAAGAACTAGGAAGGACCATTGCCCAGCTTGTCCATGCTTTTCACACGACGGAGGCACAGCACC
AGTTCCTGAAGGCCTTCTGGCAGACCATGATCCGGGAGTGGGTGGGCATTGACAGACTGCGCCTGGATAA
GTTCTACATGCTCATGAGGATGGTCCTAAGTGAGTCACTGAAGGCTGTGAAAGCCCGGGGATGGGACGAG
AGACAGATTGAGCAGCTGCTAGAGCTGCTAACCACCGAGATCCTGAACCCCGACAGCCAGGCCCCCAGTG
GGGTGAAGAGCCACTTCCTAGAGATCTTTCTGGAGGAGCTGGCCAAAGTGGGCGCTGCAGAGCTCACCGC
AGACCAGAATCTGCAGTTCATCGACCCCTTCTGCCAGATAGCAGCCCGCACTAAGGATTCCCAGGTTTTG
CATAAGATCATTCAGAGCATCTTTCAGACGATTGTGGAGCAGGCTCCCTTGGCCATAGAAGACATCATGA
ATGAACTGGACACACAGAGTGGAGAGGGTGAAGCATCAGATGGTGATGATGGTGAAGCATCAGATGGTGA
TGATGGAGAAGCATCAGACGATGATGATGGTGAAGCGTCAGATGGTGGTGATGGTGATGTGGCAGACAGT
GATGATAGTGATGGGGCAGACGATGATGATGGTGACGTGTCAGACGGTGACGGTGGTGACAATGATGAAG
GTGACAGTAACAAGTCCTCAGAGGGTGAGCAGGATCTGCAAGACACACCACCCAAGAAGCTGCCTGCAGG
CACCGCACATAGGGCTGGCCCTGAGGCAGACAAGGAACAGGCGTGGGATGACGAGGAGAACGCTGGCCCT
GTCCTCCAGTTTGACTACGAGGCACTTGCTAACAGGCTGTTCAAGCTCGCCAGTAGACAGAGCACCCCTT
CTCAGAACAGGAAGCGCCTCTACAAAGTGATCCAAAAGCTGCGGGAGCTGGCTGGAGGCACTTTCCCAGA
GGATGATGTCCCTGAAAAAGCCTACAAGAAGATGCTGGAAGGGAGGCGGGAACGGAAGAAGAAAAAGAAG
CGCTTGCCCAAACCTCAGCCCCAGAATAAGGAAGCGGGGAGTGAGGCAGAATCCTCAAGTGCAGACCCAG
GCCCAGGAAGGAAGAGGAAGAGGAACAGGAAAACGGATGAGAAGGCTGGCCAAGGGGGTCCTCCTGGGAA
GAGGAGGAAGCCCGGGGCTAGGGCAAAGGGGGCTGGGGCCCAGCAACCCAAGAAGAGGATACAGTCATCA
CAGAGTGCAGAGTGA

Translation (494 aa):
MVPGVPLPPEIQLAQRLAGNEQVTRDRALRKLRKYIEARSQRATGGFTPDELLKVWKGLFYCMWMQDKPL
QQEELGRTIAQLVHAFHTTEAQHQFLKAFWQTMIREWVGIDRLRLDKFYMLMRMVLSESLKAVKARGWDE
RQIEQLLELLTTEILNPDSQAPSGVKSHFLEIFLEELAKVGAAELTADQNLQFIDPFCQIAARTKDSQVL
HKIIQSIFQTIVEQAPLAIEDIMNELDTQSGEGEASDGDDGEASDGDDGEASDDDDGEASDGGDGDVADS
DDSDGADDDDGDVSDGDGGDNDEGDSNKSSEGEQDLQDTPPKKLPAGTAHRAGPEADKEQAWDDEENAGP
VLQFDYEALANRLFKLASRQSTPSQNRKRLYKVIQKLRELAGGTFPEDDVPEKAYKKMLEGRRERKKKKK
RLPKPQPQNKEAGSEAESSSADPGPGRKRKRNRKTDEKAGQGGPPGKRRKPGARAKGAGAQQPKKRIQSS
QSAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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