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Report for CCDS27714.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27714.1 Public Mus musculus 15 Nup50 23 108 98 CCDS HistoryNCBI Gene:18141Re-query CCDS DB by CCDS ID:27714.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27714.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165443.3 ENSMUSP00000131457.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165443.3Link to Ensembl Protein Viewer:ENSMUSP00000131457.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000165443Re-query CCDS DB by Protein ID:ENSMUSP00000131457
Original member Current member EBI ENSMUST00000230411.1 ENSMUSP00000155656.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230411.1Link to Ensembl Protein Viewer:ENSMUSP00000155656.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230411Re-query CCDS DB by Protein ID:ENSMUSP00000155656
Original member Current member NCBI NM_016714.2 NP_057923.2 Accepted alive Link to Nucleotide Sequence:NM_016714.2Link to Protein Sequence:NP_057923.2Re-query CCDS DB by Nucleotide ID:NM_016714Re-query CCDS DB by Protein ID:NP_057923Link to BLAST:NP_057923.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057923.2 466 Q9JIH2 466 100% 0 0

Chromosomal Locations for CCDS 27714.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 84927378 84927446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84929372 84929455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84933535 84933718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84934864 84935523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84937487 84937568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84938358 84938476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84939646 84939848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGGCGAAGAGAGTTGCGGAGAAGGAGTTGACTGACAGGAACTGGGATGAGGAAGACGAAGTTGAAGAGA
TGGGAACATTCTCAGTGGCCAGTGAGGAAGTCATGAAGAACAGAGCCGTAAAGAAGGCAAAGCGCAGAAA
CGTTGGATTTGAATCTGATAGCGGAGGAGCCTTTAAAGGTTTCAAAGGTTTGGTTGTGCCTTCTGGAGGA
GGAGGGTTTTCTGGATTTGGTGGCTCTGGAGGAAAGCCTCTGGAAGGACTGACAAATGGAAACAGCACAG
ACAATGCCACGCCCTTCTCCAATGTAAAGACAGCAGCAGAGCCCAAGGCAGCCTTTGGTTCTTTTGCTGT
GAATGGCCCTACTACCTTGGTGGATAAAAAGATTTCAAGTCCCAAATGCAATAACAGCAATCAGCCGCCC
TCCTCCGGCCCTGCTTCCAGTACCGCCTGCCCTGGGAATGCCTATCACAAGCAGCTGGCTGGCTTGAACT
GCTCCGTCCGCGATTGGATAGTGAAGCACGTGAACACAAACCCGCTTTGTGACCTGACTCCCATTTTTAA
AGACTATGAGAGATACTTGGCGACGATCGAGAAGCAGCTTGAGAATGGAGGCGGCAGCAGTTCTGAGAGC
CAGACAGACAGGGCGACGGCTGGAATGGAGCCTCCTTCCCTTTTTGGTTCAACAAAACTACAGCAAGAGT
CACCATTTTCATTTCATGGCAACAAAGCGGAGGACACATCTGAAAAGGTGGAGTTTACAGCAGAAAAGAA
ATCGGACGCAGCACAAGGAGCAACAAGTGCCTCGTTTAGTTTCGGCAAGAAAATTGAGAGCTCGGCTTTG
GGCTCGTTAAGCTCTGGCTCCCTAACTGGGTTTTCATTCTCTGCTGGAAGCTCCAGCTTGTTTGGTAAAG
ATGCTGCCCAGAGTAAAGCAGCCTCTTCGCTGTTCTCTGCTAAAGCATCCGAGAGTCCGGCAGGAGGCGG
CAGCAGCGAGTGCAGAGATGGTGAAGAAGAGGAGAATGACGAGCCACCCAAGGTAGTGGTGACCGAAGTA
AAGGAAGAGGATGCTTTCTACTCCAAAAAATGTAAACTATTTTACAAGAAAGACAACGAATTTAAAGAGA
AGGGTGTGGGGACCCTGCATTTAAAACCCACAGCAACTCAGAAGACCCAGCTCTTGGTGCGGGCAGACAC
CAACCTAGGCAACATACTGCTGAATGTTCTGATCGCCCCCAACATGCCGTGCACCCGGACAGGAAAGAAC
AACGTCCTTATCGTCTGTGTCCCCAACCCCCCACTCGATGAGAAGCAGCCCACTCTCCCGGCCACCATGC
TGATCCGGGTGAAGACGAGCGAGGATGCCGATGAATTGCACAAGATTTTACTGGAGAAAAAGGATGCCTG
A

Translation (466 aa):
MAKRVAEKELTDRNWDEEDEVEEMGTFSVASEEVMKNRAVKKAKRRNVGFESDSGGAFKGFKGLVVPSGG
GGFSGFGGSGGKPLEGLTNGNSTDNATPFSNVKTAAEPKAAFGSFAVNGPTTLVDKKISSPKCNNSNQPP
SSGPASSTACPGNAYHKQLAGLNCSVRDWIVKHVNTNPLCDLTPIFKDYERYLATIEKQLENGGGSSSES
QTDRATAGMEPPSLFGSTKLQQESPFSFHGNKAEDTSEKVEFTAEKKSDAAQGATSASFSFGKKIESSAL
GSLSSGSLTGFSFSAGSSSLFGKDAAQSKAASSLFSAKASESPAGGGSSECRDGEEEENDEPPKVVVTEV
KEEDAFYSKKCKLFYKKDNEFKEKGVGTLHLKPTATQKTQLLVRADTNLGNILLNVLIAPNMPCTRTGKN
NVLIVCVPNPPLDEKQPTLPATMLIRVKTSEDADELHKILLEKKDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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