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Report for CCDS17177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17177.1 Public Mus musculus 2 Ntsr1 23 108 98 CCDS HistoryNCBI Gene:18216Re-query CCDS DB by CCDS ID:17177.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17177.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029084.8 ENSMUSP00000029084.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029084.8Link to Ensembl Protein Viewer:ENSMUSP00000029084.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029084Re-query CCDS DB by Protein ID:ENSMUSP00000029084
Original member Current member EBI ENSMUST00000170448.1 ENSMUSP00000127548.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170448.1Link to Ensembl Protein Viewer:ENSMUSP00000127548.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170448Re-query CCDS DB by Protein ID:ENSMUSP00000127548
Original member Current member NCBI NM_018766.2 NP_061236.1 Accepted alive Link to Nucleotide Sequence:NM_018766.2Link to Protein Sequence:NP_061236.1Re-query CCDS DB by Nucleotide ID:NM_018766Re-query CCDS DB by Protein ID:NP_061236Link to BLAST:NP_061236.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061236.1 424 O88319 424 100% 0 0

Chromosomal Locations for CCDS 17177.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180500418 180501131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180538617 180538833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180541430 180541520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180542528 180542780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGCACCTCAACAGCTCCGTGCAGCAGGGAGCCCCAAGTGAACCCGGTGCCCAGCCCTTCCCACATCCAC
AGTTCGGACTGGAGACGATGCTCCTGGCGCTCAGCTTGAGCAATGGTTCTGGCAATTCCTCAGAATCCAT
CCTGGAGCCCAACAGCAACCTGGACGTGAACACTGACATTTATTCCAAGGTGCTGGTGACCGCTGTATAC
CTGGCACTTTTTGTGGTGGGCACTGTGGGCAACTCGGTGACAGCCTTCACTCTAGCGCGGAAGAAGTCGC
TGCAGAGCCTGCAGAGCACTGTGCATTACCACCTGGGTAGCCTGGCACTGTCTGACCTGCTCATCCTGCT
GCTGGCCATGCCCGTGGAGCTGTACAACTTCATCTGGGTGCACCATCCCTGGGCCTTTGGGGATGCTGGC
TGCCGTGGCTACTATTTCCTGCGAGATGCCTGCACCTATGCCACAGCCCTCAATGTAGCCAGCCTGAGTG
TGGAGCGCTACTTGGCCATCTGCCATCCCTTCAAGGCCAAGACCCTCATGTCCCGCAGCCGCACCAAGAA
ATTCATCAGTGCCATATGGCTAGCCTCGGCGCTGCTGGCTGTACCCATGCTTTTCACCATGGGCCTGCAG
AACCGCAGTGCCGATGGCCAGCACCCTGGTGGCCTGGTGTGCACACCCACGGTGGACACAGCCACCGTCA
AGGTCGTCATCCAGGTTAACACCTTCATGTCCTTCCTGTTTCCCATGCTGATCATCTCCATCCTAAACAC
TGTGATAGCCAACAAACTGACCGTCATGGTGCACCAGGCTGCCGAGCAGGGCCGTGGTGTGTGCACCGTG
GGCACCCACAACAGTTTAGAGCACAGCACGTTCAACATGTCCATCGAGCCAGGCCGTGTCCAGGCCCTGC
GCCATGGAGTCCTCGTCTTACGTGCTGTGGTAATCGCCTTTGTGGTCTGCTGGCTGCCCTACCACGTGCG
GCGCCTCATGTTCTGCTATATCTCAGATGAACAGTGGACTACGTTCCTCTTCGACTTCTACCACTATTTC
TATATGCTGACCAACGCTCTCTTCTACGTCAGCTCAGCCATCAATCCCATCCTTTACAACCTCGTCTCCG
CCAACTTCCGCCAGGTCTTCCTGTCCACACTGGCTTGCCTCTGTCCTGGGTGGCGCCGCCGCCGAAAGAA
GAGGCCAACGTTCTCCAGGAAGCCAAACAGCATGTCCAGCAACCATGCGTTTTCCACCAGCGCCACCCGG
GAAACCCTGTACTAG

Translation (424 aa):
MHLNSSVQQGAPSEPGAQPFPHPQFGLETMLLALSLSNGSGNSSESILEPNSNLDVNTDIYSKVLVTAVY
LALFVVGTVGNSVTAFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAG
CRGYYFLRDACTYATALNVASLSVERYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAVPMLFTMGLQ
NRSADGQHPGGLVCTPTVDTATVKVVIQVNTFMSFLFPMLIISILNTVIANKLTVMVHQAAEQGRGVCTV
GTHNSLEHSTFNMSIEPGRVQALRHGVLVLRAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYF
YMLTNALFYVSSAINPILYNLVSANFRQVFLSTLACLCPGWRRRRKKRPTFSRKPNSMSSNHAFSTSATR
ETLY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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