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Report for CCDS25672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25672.1 Public Mus musculus 11 Rhbdf2 23 108 98 CCDS HistoryNCBI Gene:217344Re-query CCDS DB by CCDS ID:25672.1Re-query CCDS DB by GeneID:217344See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103028.7 ENSMUSP00000099317.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103028.7Link to Ensembl Protein Viewer:ENSMUSP00000099317.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103028Re-query CCDS DB by Protein ID:ENSMUSP00000099317
Original member Current member EBI ENSMUST00000103029.9 ENSMUSP00000099318.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103029.9Link to Ensembl Protein Viewer:ENSMUSP00000099318.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103029Re-query CCDS DB by Protein ID:ENSMUSP00000099318
Original member NCBI NM_001167680.1 NP_001161152.1 Updated not alive Link to Nucleotide Sequence:NM_001167680.1Link to Protein Sequence:NP_001161152.1Re-query CCDS DB by Nucleotide ID:NM_001167680Re-query CCDS DB by Protein ID:NP_001161152
Current member NCBI NM_001167680.2 NP_001161152.1 Accepted alive Link to Nucleotide Sequence:NM_001167680.2Link to Protein Sequence:NP_001161152.1Re-query CCDS DB by Nucleotide ID:NM_001167680Re-query CCDS DB by Protein ID:NP_001161152Link to BLAST:NP_001161152.1
Original member NCBI NM_172572.3 NP_766160.2 Updated not alive Link to Nucleotide Sequence:NM_172572.3Link to Protein Sequence:NP_766160.2Re-query CCDS DB by Nucleotide ID:NM_172572Re-query CCDS DB by Protein ID:NP_766160
Current member NCBI NM_172572.4 NP_766160.2 Accepted alive Link to Nucleotide Sequence:NM_172572.4Link to Protein Sequence:NP_766160.2Re-query CCDS DB by Nucleotide ID:NM_172572Re-query CCDS DB by Protein ID:NP_766160Link to BLAST:NP_766160.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161152.1 827 Q80WQ6 827 100% 0 0
NP_766160.2 827 Q80WQ6 827 100% 0 0

Chromosomal Locations for CCDS 25672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116599019 116599438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116600061 116600214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116600398 116600498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116600610 116600685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116600895 116600989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116601086 116601149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116601285 116601391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116601594 116601755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116601889 116601963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116602189 116602300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116603653 116603853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116603932 116604050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116604378 116604506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116604961 116605164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116605243 116605438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116606108 116606232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116607228 116607371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2484 nt):
ATGGCCTCAGCTGACAAGAATGGCAGCAACCTCCCATCTGTGTCTGGTAGCCGCCTGCAGAGCCGGAAGC
CACCCAACCTCTCCATCACCATCCCGCCACCAGAGAGCCAGGCCCCCGGCGAGCAGGATAGCATGCTTCC
TGAGAGGCGCAAGAACCCAGCCTACCTGAAGAGTGTCAGCCTACAGGAGCCCCGGGGACGATGGCAGGAG
GGCGCAGAGAAGCGCCCCGGCTTCCGCCGCCAGGCCTCCCTGTCCCAGAGCATCCGCAAGAGCACAGCCC
AGTGGTTTGGGGTCAGCGGCGACTGGGAGGGCAAGCGACAAAACTGGCATCGTCGCAGCCTGCACCACTG
CAGCGTGCACTATGGCCGCCTCAAGGCCTCGTGCCAGAGAGAACTGGAGCTGCCCAGCCAGGAGGTGCCA
TCCTTCCAGGGCACTGAGTCTCCAAAACCGTGCAAGATGCCCAAGATTGTGGATCCACTGGCTCGGGGTA
GGGCCTTCCGCCATCCAGATGAGGTGGACCGGCCTCACGCTGCCCACCCACCTCTGACTCCAGGGGTCCT
GTCTCTCACATCCTTCACCAGTGTCCGCTCTGGCTACTCCCATCTGCCCCGCCGCAAGAGGATATCTGTT
GCCCATATGAGCTTTCAGGCAGCCGCCGCCCTCCTCAAGGGGCGTTCCGTGCTAGATGCGACTGGGCAGC
GGTGCCGGCATGTCAAACGCAGCTTCGCTTACCCCAGCTTCCTGGAGGAGGATGCTGTCGATGGAGCTGA
CACCTTCGACTCCTCCTTTTTTAGTAAGGAAGAAATGAGCTCCATGCCTGACGATGTCTTTGAGTCCCCC
CCACTCTCTGCCAGCTACTTCCGAGGTGTCCCACACTCTGCCTCCCCGGTCTCCCCGGATGGAGTGCACA
TCCCGCTAAAAGAATACAGCGGTGGCCGAGCCCTGGGTCCCGGGACCCAGCGTGGCAAACGCATTGCCTC
CAAAGTAAAGCACTTTGCATTTGACCGGAAGAAGAGGCACTACGGCCTGGGCGTCGTGGGTAACTGGCTC
AACCGAAGCTATCGACGCAGCATCAGCAGCACCGTGCAGCGGCAGCTGGAGAGCTTCGATAGCCACCGGC
CCTACTTCACCTACTGGCTGACGTTCGTTCACATCATCATCACCTTGCTGGTGATCTGCACCTATGGCAT
CGCACCTGTGGGCTTTGCCCAGCACGTTACCACCCAGCTGGTGCTGAAGAACAGAGGCGTGTATGAGAGC
GTGAAGTACATCCAGCAGGAGAACTTCTGGATTGGCCCCAGCTCGATTGACCTCATTCACCTGGGAGCAA
AGTTCTCGCCCTGCATCCGGAAGGACCAGCAAATTGAGCAGCTGGTACGGAGGGAGCGCGACATTGAGCG
CACCTCTGGCTGCTGTGTCCAGAATGACCGCTCGGGCTGCATCCAGACCCTGAAGAAGGACTGCTCGGAG
ACTTTAGCCACGTTCGTAAAGTGGCAGAATGATACTGGGCCCTCAGACAAGTCTGACCTGAGCCAGAAGC
AGCCATCGGCGGTTGTGTGCCACCAAGACCCCAGGACCTGTGAAGAGCCTGCCTCCAGTGGGGCCCACAT
CTGGCCTGATGACATTACCAAGTGGCCGATCTGCACAGAGCAGGCTCAGAGCAACCACACGGGCTTGTTG
CACATAGACTGTAAGATCAAAGGCCGCCCCTGCTGCATCGGCACCAAGGGCAGCTGCGAGATCACCACTC
GGGAGTACTGTGAGTTCATGCATGGCTATTTCCATGAAGACGCGACGCTGTGTTCCCAGGTGCACTGTTT
AGACAAGGTGTGTGGGCTCCTGCCTTTCCTCAACCCTGAGGTCCCTGACCAGTTCTACCGGATCTGGCTG
TCTTTATTCCTGCATGCTGGCATAGTGCACTGCCTTGTGTCTGTGGTCTTCCAAATGACCATCCTGAGGG
ACCTAGAGAAGCTGGCCGGCTGGCACCGCATCTCCATCATCTTCATCCTTAGTGGCATTACAGGCAACCT
GGCCAGCGCCATCTTCCTCCCCTACCGGGCAGAGGTGGGCCCAGCCGGGTCGCAGTTCGGCCTCCTCGCC
TGCCTCTTCGTGGAGCTGTTCCAGAGCTGGCAGCTGTTGGAGCGGCCGTGGAAGGCCTTCTTCAACCTGT
CGGCCATTGTGCTTTTCCTCTTCATCTGTGGCCTCCTGCCCTGGATAGACAACATCGCCCACATCTTCGG
GTTCCTCAGCGGCATGCTTCTGGCCTTCGCCTTCCTGCCTTACATTACCTTCGGCACCAGCGACAAGTAC
CGCAAGCGAGCCCTCATCCTCGTGTCGCTGCTGGTCTTTGCTGGGCTCTTTGCTTCCCTGGTGCTGTGGC
TGTACATCTACCCCATCAACTGGCCCTGGATCGAGTACCTCACCTGCTTTCCCTTCACCAGCCGCTTCTG
TGAGAAGTACGAGCTAGACCAGGTGCTACACTAA

Translation (827 aa):
MASADKNGSNLPSVSGSRLQSRKPPNLSITIPPPESQAPGEQDSMLPERRKNPAYLKSVSLQEPRGRWQE
GAEKRPGFRRQASLSQSIRKSTAQWFGVSGDWEGKRQNWHRRSLHHCSVHYGRLKASCQRELELPSQEVP
SFQGTESPKPCKMPKIVDPLARGRAFRHPDEVDRPHAAHPPLTPGVLSLTSFTSVRSGYSHLPRRKRISV
AHMSFQAAAALLKGRSVLDATGQRCRHVKRSFAYPSFLEEDAVDGADTFDSSFFSKEEMSSMPDDVFESP
PLSASYFRGVPHSASPVSPDGVHIPLKEYSGGRALGPGTQRGKRIASKVKHFAFDRKKRHYGLGVVGNWL
NRSYRRSISSTVQRQLESFDSHRPYFTYWLTFVHIIITLLVICTYGIAPVGFAQHVTTQLVLKNRGVYES
VKYIQQENFWIGPSSIDLIHLGAKFSPCIRKDQQIEQLVRRERDIERTSGCCVQNDRSGCIQTLKKDCSE
TLATFVKWQNDTGPSDKSDLSQKQPSAVVCHQDPRTCEEPASSGAHIWPDDITKWPICTEQAQSNHTGLL
HIDCKIKGRPCCIGTKGSCEITTREYCEFMHGYFHEDATLCSQVHCLDKVCGLLPFLNPEVPDQFYRIWL
SLFLHAGIVHCLVSVVFQMTILRDLEKLAGWHRISIIFILSGITGNLASAIFLPYRAEVGPAGSQFGLLA
CLFVELFQSWQLLERPWKAFFNLSAIVLFLFICGLLPWIDNIAHIFGFLSGMLLAFAFLPYITFGTSDKY
RKRALILVSLLVFAGLFASLVLWLYIYPINWPWIEYLTCFPFTSRFCEKYELDQVLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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