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Report for CCDS13688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13688.1 Public Homo sapiens 21 RSPH1 24 110 108 CCDS HistoryNCBI Gene:89765Re-query CCDS DB by CCDS ID:13688.1Re-query CCDS DB by GeneID:89765See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13688.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291536.8 ENSP00000291536.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291536.8Link to Ensembl Protein Viewer:ENSP00000291536.3Re-query CCDS DB by Nucleotide ID:ENST00000291536Re-query CCDS DB by Protein ID:ENSP00000291536
Original member Current member NCBI NM_080860.4 NP_543136.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080860.4Link to Protein Sequence:NP_543136.1Re-query CCDS DB by Nucleotide ID:NM_080860Re-query CCDS DB by Protein ID:NP_543136Link to BLAST:NP_543136.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543136.1 309 Q8WYR4-1 309 100% 0 0

Chromosomal Locations for CCDS 13688.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 42472818 42472870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42475898 42476047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42477291 42477444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42482637 42482708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42485669 42485804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42486371 42486461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42492758 42492863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42492966 42493079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42496133 42496186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGTCGGACCTGGGCTCGGAGGAGTTGGAGGAGGAGGGAGAGAATGATATTGGGGAATATGAGGGGGGTC
GG
AATGAGGCAGGCGAAAGGCACGGACGTGGGAGGGCACGGCTACCCAACGGGGACACCTACGAAGGGAG
C
TACGAATTCGGTAAAAGACATGGCCAGGGGATCTACAAATTTAAAAATGGTGCTCGATATATCGGAGAA
TAT
GTTAGAAATAAAAAGCACGGTCAAGGCACTTTTATATATCCAGATGGATCCAGATATGAAGGAGAGT
GG
GCAAATGACCTGCGGCACGGCCATGGCGTATACTACTACATCAATAATGACACCTACACTGGAGAGTG
G
TTTGCTCATCAAAGGCATGGGCAAGGCACCTATTTATACGCGGAGACGGGCAGTAAGTATGTTGGCACC
TGG
GTGAACGGACAGCAGGAGGGCACGGCCGAGCTCATTCACCTGAACCACAGGTACCAGGGCAAGTTCT
TG
AACAAAAATCCTGTTGGCCCTGGAAAGTATGTATTTGATGTTGGGTGTGAACAACATGGTGAATATCG
T
TTAACAGATATGGAAAGAGGAGAAGAGGAAGAGGAGGAAGAATTAGTAACTGTTGTTCCAAAATGGAAA
GCT
ACCCAAATCACTGAATTGGCCCTGTGGACACCAACTCTCCCCAAAAAGCCGACCTCTACGGATGGAC
CT
GGCCAAGACGCTCCAGGAGCTGAGAGTGCAGGAGAACCCGGGGAGGAGGCCCAGGCTCTGCTGGAGGG
C
TTCGAGGGTGAGATGGACATGAGGCCTGGAGATGAAGATGCAGACGTCCTCCGGGAAGAGAGCCGGGAG
TAT
GACCAGGAGGAGTTCCGCTATGACATGGATGAGGGAAACATTAATTCTGAAGAAGAAGAAACTAGAC
AG
TCAGACCTCCAGGACTAA


Translation (309 aa):
MSDLGSEELEEEGENDIGEYEGGRNEAGERHGRGRARLPNGDTYEGSYEFGKRHGQGIYKFKNGARYIGE
Y
VRNKKHGQGTFIYPDGSRYE
GEWANDLRHGHGVYYYINNDTYTGEWFAHQRHGQGTYLYAETGSKYVGT
W
VNGQQEGTAELIHLNHRYQGKFLNKN
PVGPGKYVFDVGCEQHGEYRLTDMERGEEEEEEELVTVVPKWK
A
TQITELALWTPTLPKKPTSTDGPGQDAPGAE
SAGEPGEEAQALLEGFEGEMDMRPGDEDADVLREESRE
Y
DQEEFRYDMDE
GNINSEEEETRQSDLQD



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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