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Report for CCDS92639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92639.1 Public Homo sapiens 19 APOC1 24 110 108 CCDS HistoryNCBI Gene:341Re-query CCDS DB by CCDS ID:92639.1Re-query CCDS DB by GeneID:341See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92639.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000592885.5 ENSP00000467368.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000592885.5Link to Ensembl Protein Viewer:ENSP00000467368.1Re-query CCDS DB by Nucleotide ID:ENST00000592885Re-query CCDS DB by Protein ID:ENSP00000467368
Original member Current member NCBI NM_001379687.1 NP_001366616.1 Accepted alive Link to Nucleotide Sequence:NM_001379687.1Link to Protein Sequence:NP_001366616.1Re-query CCDS DB by Nucleotide ID:NM_001379687Re-query CCDS DB by Protein ID:NP_001366616Link to BLAST:NP_001366616.1

Chromosomal Locations for CCDS 92639.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44914892 44914949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44916190 44916470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44919173 44919223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGAGGCTCTTCCTGTCGCTCCCGGTCCTGGTGGTGGTTCTGTCGATCGTCTTGGAAGGCCCAGCCCCAG
CCCAGGGGACCCCAGACGTCTCCAGTGCCTTGGATAAGCTGAAGGAGTTTGGAAACACACTGGAGGACAA
GGCTCGGGAACTCATCAGCCGCATCAAACAGAGTGAACTTTCTGCCAAGATGCGGTTAGAACCCTTCCCA
GGGCACGGGAGAGCTGGGGTGTGTTTTTGGGTGGAGCCCTGGCAGATGGTCCAAGATGAACAGATTGAAA
AAAAAACAAGTCCTGGAGAGGCTGACAACATCCCTCTGGTCACACAGCTAGATCTCAAGGGAGTGGTTTT
CAGAGACATTTCAGAAAGTGAAGGAGAAACTCAAGATTGA

Translation (129 aa):
MRLFLSLPVLVVVLSIVLEGPAPAQGTPDVSSALDKLKEFGNTLEDKARELISRIKQSELSAKMRLEPFP
GHGRAGVCFWVEPWQMVQDEQIEKKTSPGEADNIPLVTQLDLKGVVFRDISESEGETQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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