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Report for CCDS4779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4779.1 Public Homo sapiens 6 CUTA 24 110 108 CCDS HistoryNCBI Gene:51596Re-query CCDS DB by CCDS ID:4779.1Re-query CCDS DB by GeneID:51596See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4779.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374496.3 ENSP00000363620.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374496.3Link to Ensembl Protein Viewer:ENSP00000363620.3Re-query CCDS DB by Nucleotide ID:ENST00000374496Re-query CCDS DB by Protein ID:ENSP00000363620
Original member Current member EBI ENST00000374500.10 ENSP00000363624.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374500.10Link to Ensembl Protein Viewer:ENSP00000363624.6Re-query CCDS DB by Nucleotide ID:ENST00000374500Re-query CCDS DB by Protein ID:ENSP00000363624
Original member Current member EBI ENST00000440279.7 ENSP00000403268.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440279.7Link to Ensembl Protein Viewer:ENSP00000403268.2Re-query CCDS DB by Nucleotide ID:ENST00000440279Re-query CCDS DB by Protein ID:ENSP00000403268
Original member Current member EBI ENST00000607266.5 ENSP00000475963.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000607266.5Link to Ensembl Protein Viewer:ENSP00000475963.1Re-query CCDS DB by Nucleotide ID:ENST00000607266Re-query CCDS DB by Protein ID:ENSP00000475963
Original member Current member NCBI NM_001014433.3 NP_001014433.2 Accepted alive Link to Nucleotide Sequence:NM_001014433.3Link to Protein Sequence:NP_001014433.2Re-query CCDS DB by Nucleotide ID:NM_001014433Re-query CCDS DB by Protein ID:NP_001014433Link to BLAST:NP_001014433.2
Original member Current member NCBI NM_001014837.2 NP_001014837.1 Accepted alive Link to Nucleotide Sequence:NM_001014837.2Link to Protein Sequence:NP_001014837.1Re-query CCDS DB by Nucleotide ID:NM_001014837Re-query CCDS DB by Protein ID:NP_001014837Link to BLAST:NP_001014837.1
Original member Current member NCBI NM_001014838.2 NP_001014838.1 Accepted alive Link to Nucleotide Sequence:NM_001014838.2Link to Protein Sequence:NP_001014838.1Re-query CCDS DB by Nucleotide ID:NM_001014838Re-query CCDS DB by Protein ID:NP_001014838Link to BLAST:NP_001014838.1
Original member Current member NCBI NM_015921.3 NP_057005.1 Accepted alive Link to Nucleotide Sequence:NM_015921.3Link to Protein Sequence:NP_057005.1Re-query CCDS DB by Nucleotide ID:NM_015921Re-query CCDS DB by Protein ID:NP_057005Link to BLAST:NP_057005.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001014433.2 156 O60888-3 156 100% 0 0
NP_001014837.1 156 O60888-3 156 100% 0 0
NP_001014838.1 156 O60888-3 156 100% 0 0
NP_057005.1 156 O60888-3 156 100% 0 0

Chromosomal Locations for CCDS 4779.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 33416650 33416776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33416920 33416969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33417097 33417142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33417251 33417310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33417481 33417668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGCCGGCGCTGCTGCCTGTGGCCTCCCGCCTTTTGTTGCTACCCCGAGTCTTGCTGACCATGGCCTCTG
GAAGCCCTCCGACCCAGCCCTCGCCGGCCTCGGATTCCGGCTCTGGCTACGTTCCGGGCTCGGTCTCTGC
AGCCTTTGTTACTTGCCCCAACGAGAAGGTCGCCAAGGAGATCGCCAGGGCCGTGGTGGAGAAGCGCCTA
GCAGCCTGCGTCAACCTCATCCCTCAGATTACATCCATCTATGAGTGGAAAGGGAAGATCGAGGAAGACA
GTGAGGTGCTGATGATGATTAAAACCCAAAGTTCCTTGGTCCCAGCTTTGACAGATTTTGTTCGTTCTGT
GCACCCTTACGAAGTGGCCGAGGTAATTGCATTGCCTGTGGAACAGGGGAACTTTCCGTACCTGCAGTGG
GTGCGCCAGGTCACAGAGTCAGTTTCTGACTCTATCACAGTCCTGCCATGA

Translation (156 aa):
MPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRL
AACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQW
VRQVTESVSDSITVLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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