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Report for CCDS24732.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24732.1 Public Mus musculus 11 Or2z2 23 108 98 CCDS HistoryNCBI Gene:18329Re-query CCDS DB by CCDS ID:24732.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24732.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055204.5 ENSMUSP00000055961.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055204.5Link to Ensembl Protein Viewer:ENSMUSP00000055961.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055204Re-query CCDS DB by Protein ID:ENSMUSP00000055961
Original member Current member EBI ENSMUST00000215691.1 ENSMUSP00000148907.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215691.1Link to Ensembl Protein Viewer:ENSMUSP00000148907.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215691Re-query CCDS DB by Protein ID:ENSMUSP00000148907
Original member Current member NCBI NM_146878.2 NP_667089.1 Accepted alive Link to Nucleotide Sequence:NM_146878.2Link to Protein Sequence:NP_667089.1Re-query CCDS DB by Nucleotide ID:NM_146878Re-query CCDS DB by Protein ID:NP_667089Link to BLAST:NP_667089.1

Chromosomal Locations for CCDS 24732.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58455000 58455947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGGCAGCGAGCACTGGAACTACTCCACCGCTGGCTTTGTGCTGACAAGCCTTTTTAACAACAGCCAGA
CACACCTGTTCCTGTTCAGCATGGTGATGTTGGTCTACATCCTTGCTATGGCAGGCAACACGGCCATGGT
CCTTCTGATTTGGATGGACACCCGACTCCACACCCCCATGTACTTCCTCCTCAGCCAGCTGTCCTTCCTG
GACATCTTCTTTACATCTGTCACTGTCCCCAAGATGATAGTAGGCTTTCTCTTTGGTTGGACGAGCATCT
CTTTCGGAGGTTGTGGGGCACAGATGTTTTTCTTCATGTTCTTGGGGGCTGCAGAGTGCCTCCTGCTGGC
CCTCATGGCTTATGACCGTTACGTGGCTATCTGCAACCCTCTGCGATACCCAGTGCTCATGAGCCGCCGG
GTGTGCCTGCTCATGGTCGTGGCCTCCTGGTTGGGAGGGTCCCTCAACGCCTCCATTCAGACTTCTCTGA
CCCTTCAGTTCCCCTACTGTGGATCACGGAAGATCTCCCACTTCTTCTGTGAGGTGCCCTCGCTGCTGAT
GCTGGCCTGTGCAGACACAGAAGCCTACAAGCAGGTACTATTTGTGACGGGTGTGGTGGTCCTCCTGGTG
CCTATTACCTTCATTACAGCCTCCTATGCCCTCATCCTGGCTGCTGTGCTCCGGATGCACTCTGTGGAGG
GGCGTCAGAAGGCCCTGGCCACATGCTCCTCCCACCTGACAGTCGTCAATCTCTTCTATGGGCCCCTTGT
CTACACCTACATGTTACCTGCTTCCTATCACTCGCCGGGCCAAGACGATGTAGTATCTGTCTTTTACACG
GTTCTCACGCCCATGCTGAACCCCGTCATCTACAGCCTCAGGAACAAGGAAGTTACAGGAGCCATGAAGA
AAGCAATGAGGAGGTGTGGCGTCAATAGAAATGCCTGA

Translation (315 aa):
MGSEHWNYSTAGFVLTSLFNNSQTHLFLFSMVMLVYILAMAGNTAMVLLIWMDTRLHTPMYFLLSQLSFL
DIFFTSVTVPKMIVGFLFGWTSISFGGCGAQMFFFMFLGAAECLLLALMAYDRYVAICNPLRYPVLMSRR
VCLLMVVASWLGGSLNASIQTSLTLQFPYCGSRKISHFFCEVPSLLMLACADTEAYKQVLFVTGVVVLLV
PITFITASYALILAAVLRMHSVEGRQKALATCSSHLTVVNLFYGPLVYTYMLPASYHSPGQDDVVSVFYT
VLTPMLNPVIYSLRNKEVTGAMKKAMRRCGVNRNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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