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Report for CCDS21544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21544.1 Public Mus musculus 7 Or51a39 23 108 98 CCDS HistoryNCBI Gene:18332Re-query CCDS DB by CCDS ID:21544.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21544.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084817.2 ENSMUSP00000081877.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084817.2Link to Ensembl Protein Viewer:ENSMUSP00000081877.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000084817Re-query CCDS DB by Protein ID:ENSMUSP00000081877
Original member Current member EBI ENSMUST00000216312.1 ENSMUSP00000149588.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216312.1Link to Ensembl Protein Viewer:ENSMUSP00000149588.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216312Re-query CCDS DB by Protein ID:ENSMUSP00000149588
Original member Current member NCBI NM_147073.1 NP_667284.1 Accepted alive Link to Nucleotide Sequence:NM_147073.1Link to Protein Sequence:NP_667284.1Re-query CCDS DB by Nucleotide ID:NM_147073Re-query CCDS DB by Protein ID:NP_667284Link to BLAST:NP_667284.1

Chromosomal Locations for CCDS 21544.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102713455 102714411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGATCTCCTCAAAGGCTTTTGTCAATATCACCTTCTTCCAGCCACAATCTTTCCTGATGACTGGCATAC
CAGGACTAGAGTTTGCTCATGGCTGGATCTCCATCCCATTCTCTTCCATGTACACTGTGGCACTCACTGG
AAACTGCCTCATCCTCCTGGCTGTGAGGAGGACCCATAGCCTACACCAGCCCATGTACTACTTTCTGTCC
ATGCTAGCCCTAAGTGATGTGGGTCTCAGCTTGTCCACATTGCCTTCCACCCTGGCTGTGCTCTGGTTTG
ACTATCGTTTCATCGACTTCAATGCCTGTCTGATCCAAATGTTCTTTCTTCATTTCTTCTCTGTGGTAGA
GTCCTCAGTCCTCTTGGCCATGTCATTTGACCGCTTTGTGGCTATCTCCAACCCTCTGCGCTATGCATCT
GTCCTCACTAACAATGTCATCATCAGGATTGGGGTGGCCATTACAACCCGAGCTACTTTGTCCCTCTTAC
CATTGCCCTTCTTGCTGAAGAGGCTGAACTACTGCCCTGGCAAGATCCTCCTGTCTCACTCATTCTGTTT
CCATGCTGATGTCATGAAGCTGGCCTGTGCTGACATTACTGTCAACATCCTATATGGACTCTATGTGGTT
CTGTCCACAGTGGGTATAGACTCCTTGCTTATTGTCATGTCCTATTCCTTGATTCTTCACACAGTCATGG
GGCTAGCCTCTCCCAGGGAGCGTGTCCGGACCCTCAACACATGTGTTTCCCATATCTTGGCTGTCCTGGT
CTTCTACATTCCAGTCATAGGTGTGTCCATGATCCATCGTTTTGGAAAGCACCTGCCTCACATTGTTCAT
GCCCTGGTTGCGTATGTGTACCTTGTGGTGCCTCCTGTGCTCAACCCCATCATCTACAGTGTCAAGTCCA
AACCCATCAGGGGAGCCATGTTCAGAGTGCTAAGTAGGAAAGGCTAA

Translation (318 aa):
MISSKAFVNITFFQPQSFLMTGIPGLEFAHGWISIPFSSMYTVALTGNCLILLAVRRTHSLHQPMYYFLS
MLALSDVGLSLSTLPSTLAVLWFDYRFIDFNACLIQMFFLHFFSVVESSVLLAMSFDRFVAISNPLRYAS
VLTNNVIIRIGVAITTRATLSLLPLPFLLKRLNYCPGKILLSHSFCFHADVMKLACADITVNILYGLYVV
LSTVGIDSLLIVMSYSLILHTVMGLASPRERVRTLNTCVSHILAVLVFYIPVIGVSMIHRFGKHLPHIVH
ALVAYVYLVVPPVLNPIIYSVKSKPIRGAMFRVLSRKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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