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Report for CCDS8565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8565.1 Public Homo sapiens 12 CDCA3 24 110 108 CCDS HistoryNCBI Gene:83461Re-query CCDS DB by CCDS ID:8565.1Re-query CCDS DB by GeneID:83461See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8565.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538862.7 ENSP00000442068.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000538862.7Link to Ensembl Protein Viewer:ENSP00000442068.1Re-query CCDS DB by Nucleotide ID:ENST00000538862Re-query CCDS DB by Protein ID:ENSP00000442068
Original member Current member EBI ENST00000535406.5 ENSP00000446339.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535406.5Link to Ensembl Protein Viewer:ENSP00000446339.1Re-query CCDS DB by Nucleotide ID:ENST00000535406Re-query CCDS DB by Protein ID:ENSP00000446339
Original member Current member NCBI NM_031299.7 NP_112589.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031299.7Link to Protein Sequence:NP_112589.1Re-query CCDS DB by Nucleotide ID:NM_031299Re-query CCDS DB by Protein ID:NP_112589Link to BLAST:NP_112589.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112589.1 268 Q99618 268 100% 0 0

Chromosomal Locations for CCDS 8565.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6849043 6849198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6849323 6849429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6849565 6849858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6850467 6850596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6850833 6850952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGGGCTCAGCCAAGAGCGTCCCAGTCACACCAGCGCGGCCTCCGCCGCACAACAAGCATCTGGCTCGAG
TGGCGGACCCCCGTTCACCTAGTGCTGGCATCCTGCGCACTCCCATCCAGGTGGAGAGCTCTCCACAGCC
AGGCCTACCAGCAGGGGAGCAACTGGAGGGTCTTAAACATGCCCAGGACTCAGATCCCCGCTCTCCTACT
CTTGGTATTGCACGGACACCTATGAAGACCAGCAGTGGAGACCCCCCAAGCCCACTGGTGAAACAGCTGA
GTGAAGTATTTGAAACTGAAGACTCTAAATCAAATCTTCCCCCAGAGCCTGTTCTGCCCCCAGAGGCACC
TTTATCTTCTGAATTGGACTTGCCTCTGGGTACCCAGTTATCTGTTGAGGAACAGATGCCACCTTGGAAC
CAGACTGAGTTCCCCTCCAAACAGGTGTTTTCCAAGGAGGAAGCAAGACAGCCCACAGAAACCCCTGTGG
CCAGCCAGAGCTCCGACAAGCCCTCAAGGGACCCTGAGACTCCCAGATCTTCAGGTTCTATGCGCAATAG
ATGGAAACCAAACAGCAGCAAGGTACTAGGGAGATCCCCCCTCACCATCCTGCAGGATGACAACTCCCCT
GGCACCCTGACACTACGACAGGGTAAGCGGCCTTCACCCCTAAGTGAAAATGTTAGTGAACTAAAGGAAG
GAGCCATTCTTGGAACTGGACGACTTCTGAAAACTGGAGGACGAGCATGGGAGCAAGGCCAGGACCATGA
CAAGGAAAATCAGCACTTTCCCTTGGTGGAGAGCTAG

Translation (268 aa):
MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKHAQDSDPRSPT
LGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSSELDLPLGTQLSVEEQMPPWN
QTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRSSGSMRNRWKPNSSKVLGRSPLTILQDDNSP
GTLTLRQGKRPSPLSENVSELKEGAILGTGRLLKTGGRAWEQGQDHDKENQHFPLVES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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