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Report for CCDS29903.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29903.1 Public Mus musculus 19 Pdcd4 23 108 98 CCDS HistoryNCBI Gene:18569Re-query CCDS DB by CCDS ID:29903.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29903.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025931.13 ENSMUSP00000025931.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025931.13Link to Ensembl Protein Viewer:ENSMUSP00000025931.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025931Re-query CCDS DB by Protein ID:ENSMUSP00000025931
Original member Current member EBI ENSMUST00000074371.12 ENSMUSP00000073975.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074371.12Link to Ensembl Protein Viewer:ENSMUSP00000073975.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000074371Re-query CCDS DB by Protein ID:ENSMUSP00000073975
Original member Current member EBI ENSMUST00000165617.2 ENSMUSP00000133135.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165617.2Link to Ensembl Protein Viewer:ENSMUSP00000133135.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165617Re-query CCDS DB by Protein ID:ENSMUSP00000133135
Original member Current member NCBI NM_001168491.1 NP_001161963.1 Accepted alive Link to Nucleotide Sequence:NM_001168491.1Link to Protein Sequence:NP_001161963.1Re-query CCDS DB by Nucleotide ID:NM_001168491Re-query CCDS DB by Protein ID:NP_001161963Link to BLAST:NP_001161963.1
Original member Current member NCBI NM_001168492.1 NP_001161964.1 Accepted alive Link to Nucleotide Sequence:NM_001168492.1Link to Protein Sequence:NP_001161964.1Re-query CCDS DB by Nucleotide ID:NM_001168492Re-query CCDS DB by Protein ID:NP_001161964Link to BLAST:NP_001161964.1
Original member Current member NCBI NM_011050.4 NP_035180.2 Accepted alive Link to Nucleotide Sequence:NM_011050.4Link to Protein Sequence:NP_035180.2Re-query CCDS DB by Nucleotide ID:NM_011050Re-query CCDS DB by Protein ID:NP_035180Link to BLAST:NP_035180.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161963.1 469 Q61823 469 100% 0 0
NP_001161964.1 469 Q61823 469 100% 0 0
NP_035180.2 469 Q61823 469 100% 0 0

Chromosomal Locations for CCDS 29903.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 53907513 53907555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53909112 53909414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53910928 53911022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53912812 53912925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53919615 53919836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53921218 53921315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53922017 53922131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53926206 53926313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53926535 53926645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53927194 53927333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53929083 53929143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGATATAGAAAATGAGCAGACACTGAATGTGAACCCCACTGACCCTGACAATTTAAGCGACTCTCTCT
TTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGC
ATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGAC
TCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCA
GTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAGGTGG
TGCAGGCGGCAAGGGTGTCTGGGGCACACCTGGACAGGTGTATGATGTGGAAGAGGTGGATGTGAAAGAT
CCAAACTATGATGACGACCAGGAGAACTGTGTTTATGAAACTGTAGTTTTGCCCCTGGATGAGACCGCAT
TTGAGAAGACTCTAACACCAATTATACAGGAATACTTTGAGCATGGAGATACAAATGAAGTTGCGGAGAT
GTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAG
GGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAA
ATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGC
ACCGCAGTTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGAT
AGTTACAAAGGAACTGTAGATTGTGTACAGGCTCGAGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTA
TGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCT
TGTTAAAGAGATTGATATGCTGCTTAAAGAGTATTTACTCTCTGGAGATATATCTGAAGCTGAACACTGC
CTTAAGGAACTGGAAGTACCTCATTTTCACCACGAGCTTGTATATGAAGCCATTGTAATGGTTTTAGAGT
CAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTAC
CATAGACCAAATGAAAAGAGGCTATGAGAGAATTTACAATGAAATCCCAGACATTAATCTGGATGTCCCA
CACTCATACTCTGTTCTTGAGAGATTTGTGGAGGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCC
GTGATCTTTGTCCATCAAGGGGAAGAAAGCGTTTTGTAAGTGAAGGAGATGGAGGCCGTCTTAAACCTGA
GAGCTACTGA

Translation (469 aa):
MDIENEQTLNVNPTDPDNLSDSLFSGDEENAGTEEIKNEINGNWISASTINEARINAKAKRRLRKNSSRD
SGRGDSVSDNGSEAVRSGVAVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKD
PNYDDDQENCVYETVVLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALE
GKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYID
SYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHC
LKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVP
HSYSVLERFVEECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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