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Report for CCDS39398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39398.1 Public Mus musculus 5 Pdx1 23 108 98 CCDS HistoryNCBI Gene:18609Re-query CCDS DB by CCDS ID:39398.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39398.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085591.6 ENSMUSP00000082729.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085591.6Link to Ensembl Protein Viewer:ENSMUSP00000082729.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085591Re-query CCDS DB by Protein ID:ENSMUSP00000082729
Original member Current member NCBI NM_008814.4 NP_032840.1 Accepted alive Link to Nucleotide Sequence:NM_008814.4Link to Protein Sequence:NP_032840.1Re-query CCDS DB by Nucleotide ID:NM_008814Re-query CCDS DB by Protein ID:NP_032840Link to BLAST:NP_032840.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032840.1 284 P52946 284 100% 0 0

Chromosomal Locations for CCDS 39398.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 147270239 147270647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147274380 147274825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGAACAGTGAGGAGCAGTACTACGCGGCCACACAGCTCTACAAGGACCCGTGCGCATTCCAGAGGGGCC
CG
GTGCCAGAGTTCAGCGCTAACCCCCCTGCGTGCCTGTACATGGGCCGCCAGCCCCCACCTCCGCCGCC
A
CCCCAGTTTACAAGCTCGCTGGGATCACTGGAGCAGGGAAGTCCTCCGGACATCTCCCCATACGAAGTG
CCC
CCGCTCGCCTCCGACGACCCGGCTGGCGCTCACCTCCACCACCACCTTCCAGCTCAGCTCGGGCTCG
CC
CATCCACCTCCCGGACCTTTCCCGAATGGAACCGAGCCTGGGGGCCTGGAAGAGCCCAACCGCGTCCA
G
CTCCCTTTCCCGTGGATGAAATCCACCAAAGCTCACGCGTGGAAAGGCCAGTGGGCAGGAGGTGCTTAC
ACA
GCGGAACCCGAGGAAAACAAGAGGACCCGTACTGCCTACACCCGGGCGCAGCTGCTGGAGCTGGAGA
AG
GAATTCTTATTTAACAAATACATCTCCCGGCCCCGCCGGGTGGAGCTGGCAGTGATGTTGAACTTGAC
C
GAGAGACACATCAAAATCTGGTTCCAAAACCGTCGCATGAAGTGGAAAAAAGAGGAAGATAAGAAACGT
AGT
AGCGGGACCCCGAGTGGGGGCGGTGGGGGCGAAGAGCCGGAGCAAGATTGTGCGGTGACCTCGGGCG
AG
GAGCTGCTGGCAGTGCCACCGCTGCCACCTCCCGGAGGTGCCGTGCCCCCAGGCGTCCCAGCTGCAGT
C
CGGGAGGGCCTACTGCCTTCGGGCCTTAGCGTGTCGCCACAGCCCTCCAGCATCGCGCCACTGCGACCG
CAG
GAACCCCGGTGA


Translation (284 aa):
MNSEEQYYAATQLYKDPCAFQRGPVPEFSANPPACLYMGRQPPPPPPPQFTSSLGSLEQGSPPDISPYEV
P
PLASDDPAGAHLHHHLPAQLGLAHPPPGPFPNGTEPGGLEEPNRVQLPFPWMKSTKAHAWKGQWA
GGAY
T
AEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKR
S
SGTPSGGGGGEEPEQDCAVTSGEELLAVPPLPPPGGAVPPGVPAAVREGLLPSGLSVSPQPSSIAPLRP
Q
EPR




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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