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Report for CCDS3552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3552.1 Public Homo sapiens 4 NPFFR2 24 110 108 CCDS HistoryNCBI Gene:10886Re-query CCDS DB by CCDS ID:3552.1Re-query CCDS DB by GeneID:10886See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3552.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308744.12 ENSP00000307822.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308744.12Link to Ensembl Protein Viewer:ENSP00000307822.7Re-query CCDS DB by Nucleotide ID:ENST00000308744Re-query CCDS DB by Protein ID:ENSP00000307822
Original member Current member EBI ENST00000358749.3 ENSP00000351599.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358749.3Link to Ensembl Protein Viewer:ENSP00000351599.3Re-query CCDS DB by Nucleotide ID:ENST00000358749Re-query CCDS DB by Protein ID:ENSP00000351599
Original member Current member NCBI NM_004885.3 NP_004876.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004885.3Link to Protein Sequence:NP_004876.3Re-query CCDS DB by Nucleotide ID:NM_004885Re-query CCDS DB by Protein ID:NP_004876Link to BLAST:NP_004876.3
Original member Current member NCBI NM_053036.3 NP_444264.1 Accepted alive Link to Nucleotide Sequence:NM_053036.3Link to Protein Sequence:NP_444264.1Re-query CCDS DB by Nucleotide ID:NM_053036Re-query CCDS DB by Protein ID:NP_444264Link to BLAST:NP_444264.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004876.3 420 Q9Y5X5-2 420 100% 0 0
NP_444264.1 420 Q9Y5X5-2 420 100% 0 0

Chromosomal Locations for CCDS 3552.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 72128592 72128919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 72138040 72138139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 72146978 72147812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGAATGAGAAATGGGACACAAACTCTTCAGAAAACTGGCATCCCATCTGGAATGTCAATGACACAAAGC
ATCATCTGTACTCAGATATTAATATTACCTATGTGAACTACTATCTTCACCAGCCTCAAGTGGCAGCAAT
CTTCATTATTTCCTACTTTCTGATCTTCTTTTTGTGCATGATGGGAAATACTGTGGTTTGCTTTATTGTA
ATGAGGAACAAACATATGCACACAGTCACTAATCTCTTCATCTTAAACCTGGCCATAAGTGATTTACTAG
TTGGCATATTCTGCATGCCTATAACACTGCTGGACAATATTATAGCAGGATGGCCATTTGGAAACACGAT
GTGCAAGATCAGTGGATTGGTCCAGGGAATATCTGTCGCAGCTTCAGTCTTTACGTTAGTTGCAATTGCT
GTAGATAGGTTCCAGTGTGTGGTCTACCCTTTTAAACCAAAGCTCACTATCAAGACAGCGTTTGTCATTA
TTATGATCATCTGGGTCCTAGCCATCACCATTATGTCTCCATCTGCAGTAATGTTACATGTGCAAGAAGA
AAAATATTACCGAGTGAGACTCAACTCCCAGAATAAAACCAGTCCAGTCTACTGGTGCCGGGAAGACTGG
CCAAATCAGGAAATGAGGAAGATCTACACCACTGTGCTGTTTGCCAACATCTACCTGGCTCCCCTCTCCC
TCATTGTCATCATGTATGGAAGGATTGGAATTTCACTCTTCAGGGCTGCAGTTCCTCACACAGGCAGGAA
GAACCAGGAGCAGTGGCACGTGGTGTCCAGGAAGAAGCAGAAGATCATTAAGATGCTCCTGATTGTGGCC
CTGCTTTTTATTCTCTCATGGCTGCCCCTGTGGACTCTAATGATGCTCTCAGACTACGCTGACCTTTCTC
CAAATGAACTGCAGATCATCAACATCTACATCTACCCTTTTGCACACTGGCTGGCATTCGGCAACAGCAG
TGTCAATCCCATCATTTATGGTTTCTTCAACGAGAATTTCCGCCGTGGTTTCCAAGAAGCTTTCCAGCTC
CAGCTCTGCCAAAAAAGAGCAAAGCCTATGGAAGCTTATGCCCTAAAAGCTAAAAGCCATGTGCTCATAA
ACACATCTAATCAGCTTGTCCAGGAATCTACATTTCAAAACCCTCATGGGGAAACCTTGCTTTATAGGAA
AAGTGCTGAAAAACCCCAACAGGAATTAGTGATGGAAGAATTAAAAGAAACTACTAACAGCAGTGAGATT
TAA

Translation (420 aa):
MNEKWDTNSSENWHPIWNVNDTKHHLYSDINITYVNYYLHQPQVAAIFIISYFLIFFLCMMGNTVVCFIV
MRNKHMHTVTNLFILNLAISDLLVGIFCMPITLLDNIIAGWPFGNTMCKISGLVQGISVAASVFTLVAIA
VDRFQCVVYPFKPKLTIKTAFVIIMIIWVLAITIMSPSAVMLHVQEEKYYRVRLNSQNKTSPVYWCREDW
PNQEMRKIYTTVLFANIYLAPLSLIVIMYGRIGISLFRAAVPHTGRKNQEQWHVVSRKKQKIIKMLLIVA
LLFILSWLPLWTLMMLSDYADLSPNELQIINIYIYPFAHWLAFGNSSVNPIIYGFFNENFRRGFQEAFQL
QLCQKRAKPMEAYALKAKSHVLINTSNQLVQESTFQNPHGETLLYRKSAEKPQQELVMEELKETTNSSEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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