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Report for CCDS18978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18978.1 Public Mus musculus 4 Per3 23 108 98 CCDS HistoryNCBI Gene:18628Re-query CCDS DB by CCDS ID:18978.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103204.10 ENSMUSP00000099493.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103204.10Link to Ensembl Protein Viewer:ENSMUSP00000099493.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103204Re-query CCDS DB by Protein ID:ENSMUSP00000099493
Original member Current member NCBI NM_011067.3 NP_035197.2 Accepted alive Link to Nucleotide Sequence:NM_011067.3Link to Protein Sequence:NP_035197.2Re-query CCDS DB by Nucleotide ID:NM_011067Re-query CCDS DB by Protein ID:NP_035197Link to BLAST:NP_035197.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035197.2 1113 O70361 1113 100% 0 0

Chromosomal Locations for CCDS 18978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 151005876 151005959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151008228 151008378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151009250 151009433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151010402 151010498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151012241 151012932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151013542 151013769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151017899 151018066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151018218 151018333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151018852 151018987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151024410 151024539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151025072 151025200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151026113 151026218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151028749 151028905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151029136 151029242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151031913 151031991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151033857 151033996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151037889 151037937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151041272 151041473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151042676 151042791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151043559 151043704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151044108 151044232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3342 nt):
ATGGATCCCTGTGGAGACCCGGCAGTACCTGGTGGCGACTGTCCCCAGACTAGGGGACCGGGGCTCCAGG
GGGCGTCTGGCCAGGAGGGTCCTCTGCAGGGCACTTGCGTGGACAGCAGCCACAGTGAACACGAAGACCG
AAACAGAATGTCTGAAGAGCTTATAATGGTTGTCCAAGAAATGAAAAAGTATTTCCCAGCCGAGAGGCAC
ACTAAGCCCAGTACCCTAGATGCTCTTAACTATGCCCTGCGCTGTGTACACAGTGTGCAAGCAAACAGTG
ACTTTTTCCAGAGTCTCGGTCCACGCGGAGCACACCAGGCAGATGTGACTGTATACAGTCTTGAGGACCT
CACCGCTCTGGCTTCTGAACATACTTCTAAGAACACAGATACCTTCGCGGCCGTGTTTTCGTTTCTGTCT
GGAAGGTTAGTGCACATTTCTGAGCAGGCTGCTTTGATCCTGAATTCTAAGAGGGGTTTCCTCAAGAGCG
TGCACTTTGTCGACCTGCTTGCCCCTCAAGACGTGAGGGCGTTCTACGCGCACACTGCTCCAACTCAGCT
TCCTTTCTGGAACAACTGGACCCAAAGAGCCTCGCAGTATGAATGTGCACCAGCGAAACCCTTTTTCTGC
AGAATCTGTGGAGGTGGAGACAGAGAGAAGAGGCATTACTCCCCATTCCGGATCCTCCCCTATTTGGTTC
ATGTACATAGCTCTGCCCAGCCAGAACCAGAGCCTTGCTGTCTAACACTGGTTGAAAAGATTCACTCTGG
TTACGAAGCTCCTCGAATCCCTGTAGATAAAAGAATTTTTACCACAACACACACTCCAGGATGTGTGTTT
CTTGAAGTAGATGAAAGAGCAGTGCCTTTGCTGGGTTACCTACCTCAGGATCTGATTGGAACATCGATCT
TAACATACTTGCACCCAGAAGATCGGCCTCTGATGGTTGCCATACACCAAAAAGTTTTAAAGTATGCCGG
CCACCCTCCGTTTGAACACTCGCCCGTCAGATTCTGCACTCAGAACGGAGAGTATGTCATTCTGGATTCC
AGCTGGTCCAGCTTTGTCAACCCCTGGAGCCGGAAGGTCTCCTTCATCATTGGTCGACATAAAGTCCGAA
CGAGTCCATTAAATGAAGATGTTTTTGCCACCAGAATAAAAAAGGCAGCCAGTAACGACAAAGACATAGC
AGAATTACAAGAACAAATTCACAAACTTCTCTTGCAGCCGGTTCATGCTAGTGCTTCCAGTGGCTACGGG
AGCCTGGGCAGCAGCGGCTCACAGGAGCAGCACGTCAGCATCACCTCTTCGAGTGAGTCCAGCGGGCACT
GTCCGGAGGAAGGCCAGCATGAGCAGATGACCCTGCAGCAGGTCTATGCCAGTGTAAACAAAATTAAGAA
TGTGGGCCAACAGCTCTACATCGAGTCCATGGCCAGATCATCAGTGAAGCCAGTGGCAGAGACGTGCGTG
GAACCGCAGGGTGGTGATGAGCAGAAGGACTTTTCTTCCTCTCAGACACTGAAAAATAAAAGCACCACGG
ATACTGGCTCCGGTGGCAATCTGCAGCAAGAGCAGCCCAGCTCGTCCTATCAGCAGATGAACTGTATCGA
CAGTGTCATCAGGTACCTGACAAGCTACAGCCTCCCGGCCTTGAAAAGAAAGTGCATCTCCTGCACAAAC
ACATCTTCATCCTCAGAAGAAGCCAAGCCAATCCCGGAGGTGGACAGCAGCCAGAGAGACACGGAACAGC
TCCTGGACATACGGAAACAGGAAACAACTGGACCATCCACAGACATCGAAGGAGGTGCTGCTCGGACCCT
GTCCACCGCCGCACTGAGCGTGGCGTCTGGCATCAGCCAGTGCAGCTGCAGCAGCACCTCTGGCCACGCT
CCGCCCCTACAGTCAGAAAGTGTTGCCGTGGCGTGTAAGCCGTGGGCCCTGAGAACGAAGGCCTCTCACC
TGGCTGCAGGAGGATTTAAGCACGTGGGGCTCACAGCAGCTGTCCTCTCTGCACACACACAGAAGGAAGA
GCAGAACTACGTTGACAGGTTCCGGGAAAAGATCCTGACCTCGCCCTACGGTTGCTATCTTCAGCAAGAG
AGCAGAAACCGTGCTCAGTACTCCTGTGTTCAAGCAGGGTCCACTGCTAAGCACAGCAGATGTGCTGGAA
GCGAGAGGCAGAAGCACAAACGAAAGAAGTTGCCAGCACCTGTGGACACCAGCAGCCCCGGTGCCCACCT
CTGTCCCCATGTCACAGGACTCCTCCCGGATGAGCAGCACTGGGGCCCATCCGCTAGCCCCTCCCCCCTC
GGCGCAGGCTTAGCATTCCCCTCGGCCCTGGTAGTTCCCAGCCAGACCCCTTATCTCCTCCCCTCTTTTC
CCCTCCAAGATATGGCCTCTCAGGGAGTGGGGGTCTCGGCAGCCTGGGGAGCTGCAGCCGGATGTCCACC
TCTGTCCGCCGGCCCCCAGGCTGTTGCCGCGTTCCCCTCCGCTTACGTGGATACTTTGATGACCATCTTC
CTGCACAACGCCCCTCTCTTCCCTCTGTGGCCGCCCTCGTTCTCCCCATACCCATCCCTGGGGGCCGCAG
GGTCTTCTGAACTGGCACCCTTAGTACCAGCAATGGCTCCAAACCCGGAACCAACCACTTCAGGCCACAG
CCAAAGGAGAGTGGAGGAGAACTGGGAGGCACACAGTGAAGAGCTTCCGTTCATTAGCTCACGGAGCAGT
TCACCGTTACAGTTAAATTTACTCCAGGAAGAAATGCCTGCGCCGTCAGAGTCCGCAGACGCAGTGAGAA
GAGGCGCTGGGCCAGACGCTAAGCATCACTGTGTTACAGGTCCCAGTGGCAGTAGGAGCCGTCACTGCAC
CTCTGGTGAGCTGGCCACGGCAACAGCGCAGCAGGAGTCTGCTGCTGCCTCAGGAAGCAGTGCCAGCAGT
ATATACTTCAGTAGCACTGACTATGCTTCTGAAGTCTCTGAAAACAGACAGAGGCCACAGGATAGACAGA
GAGACGAAGCCCTTCCCGGGGCGGCTGAAGAGTCCATCTGGAGAATGATAGAGCGGACACCAGAGTGTGT
TCTCATGACATACCAGGTGCCCGAGAGGGGTCGAGAGGAGGTGCTGAAGCAGGACCTGGAGAAGCTCCAG
AGCATGGAACAGCAGCAGCCCCTGTTCTCTCCCGCGCAGAGGGAGGAGCTGGCCAAGGTGCGCTCCTGGA
TCCACAGCCACACAGCCCCTCAGGAGGGACACCTCCAGAGCTGTGTCGCCTGTGAAGACAGAGGTTCAGT
GGGTGACACTGCAGAGGTCCTGGAACAGCACCCAGCAGAAGACACCAGTTGA

Translation (1113 aa):
MDPCGDPAVPGGDCPQTRGPGLQGASGQEGPLQGTCVDSSHSEHEDRNRMSEELIMVVQEMKKYFPAERH
TKPSTLDALNYALRCVHSVQANSDFFQSLGPRGAHQADVTVYSLEDLTALASEHTSKNTDTFAAVFSFLS
GRLVHISEQAALILNSKRGFLKSVHFVDLLAPQDVRAFYAHTAPTQLPFWNNWTQRASQYECAPAKPFFC
RICGGGDREKRHYSPFRILPYLVHVHSSAQPEPEPCCLTLVEKIHSGYEAPRIPVDKRIFTTTHTPGCVF
LEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVILDS
SWSSFVNPWSRKVSFIIGRHKVRTSPLNEDVFATRIKKAASNDKDIAELQEQIHKLLLQPVHASASSGYG
SLGSSGSQEQHVSITSSSESSGHCPEEGQHEQMTLQQVYASVNKIKNVGQQLYIESMARSSVKPVAETCV
EPQGGDEQKDFSSSQTLKNKSTTDTGSGGNLQQEQPSSSYQQMNCIDSVIRYLTSYSLPALKRKCISCTN
TSSSSEEAKPIPEVDSSQRDTEQLLDIRKQETTGPSTDIEGGAARTLSTAALSVASGISQCSCSSTSGHA
PPLQSESVAVACKPWALRTKASHLAAGGFKHVGLTAAVLSAHTQKEEQNYVDRFREKILTSPYGCYLQQE
SRNRAQYSCVQAGSTAKHSRCAGSERQKHKRKKLPAPVDTSSPGAHLCPHVTGLLPDEQHWGPSASPSPL
GAGLAFPSALVVPSQTPYLLPSFPLQDMASQGVGVSAAWGAAAGCPPLSAGPQAVAAFPSAYVDTLMTIF
LHNAPLFPLWPPSFSPYPSLGAAGSSELAPLVPAMAPNPEPTTSGHSQRRVEENWEAHSEELPFISSRSS
SPLQLNLLQEEMPAPSESADAVRRGAGPDAKHHCVTGPSGSRSRHCTSGELATATAQQESAAASGSSASS
IYFSSTDYASEVSENRQRPQDRQRDEALPGAAEESIWRMIERTPECVLMTYQVPERGREEVLKQDLEKLQ
SMEQQQPLFSPAQREELAKVRSWIHSHTAPQEGHLQSCVACEDRGSVGDTAEVLEQHPAEDTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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