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Report for CCDS51994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51994.1 Public Mus musculus 7 Vmn2r30 23 108 98 CCDS HistoryNCBI Gene:22306Re-query CCDS DB by CCDS ID:51994.1Re-query CCDS DB by GeneID:22306See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51994.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072475.8 ENSMUSP00000072296.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072475.8Link to Ensembl Protein Viewer:ENSMUSP00000072296.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072475Re-query CCDS DB by Protein ID:ENSMUSP00000072296
Original member NCBI NM_009490.3 NP_033516.3 Updated not alive Link to Nucleotide Sequence:NM_009490.3Link to Protein Sequence:NP_033516.3Re-query CCDS DB by Nucleotide ID:NM_009490Re-query CCDS DB by Protein ID:NP_033516
Current member NCBI NM_009490.4 NP_033516.3 Accepted alive Link to Nucleotide Sequence:NM_009490.4Link to Protein Sequence:NP_033516.3Re-query CCDS DB by Nucleotide ID:NM_009490Re-query CCDS DB by Protein ID:NP_033516Link to BLAST:NP_033516.3

Chromosomal Locations for CCDS 51994.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 7312274 7313178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7317072 7317195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7323050 7323277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7324804 7325616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7334147 7334438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7337297 7337493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2559 nt):
ATGTTCATTTTCATGGGAGTCTTCTTCCTCCTTAATATTACACTTCTCATGGCCAATTTCATTAATCCCA
GGTGCTTTTGGAGAATAAATTTGGATGAAATAACGGATGAATATTTGGGATTATCTTGTACTTTCATCCT
GGCAGCAGTTCAGACACCCACTGAAAAAGATTATTTCAACAAGACTCTTAATGTTCTAAAAACAACTAAA
AACCACAAATATGCTTTGGCATTGGTGTTTGCAATGGATGAAATCAACAGAAATCCTGATCTTTTACCAA
ATATGTCTTTGATTATAAGATACACTTTGGGCCTTTGTGATGGAAAAACTGTAACACCTACACCATATTT
ATTTCATAAAAAAAAACAAAGCCCTATCCCTAATTATTTCTGTAATGAAGAGACTATGTGTTCATTTCTG
CTTTCAGGACCCAAGTGGGATGTATCTTTAAGTTTCTGGATGTACCTGGACAGCTTCTTATCTCCGCGTA
TCCTTCAGCTTACCTATGGACCTTTCCATTCTATCTTCAGTGATGATGAACAATATCCCTATCTCTATCA
GATGGCCCCAAAGGACACATCTCTAGCATTGGCAATGGTCTCCTTCATACTTTATTTGAAATGGAACTGG
ATTGGCCTTGTCATCCCAGATGACGATCAAGGAAACCAATTTCTTTTAGAGTTGAAGAAACAGAGTGAAA
ACAAGGAAATTTGCTTTGCCTTTGTGAAAATGATCTCTGTTGATGATACTTCATTTCCACATAAAACTGA
AATGGACTACAACCAAATTGTGATGTCATCCACAAATGTTATTATCATTTATGGAGAAACACGCAATTTC
ATTTATTTGATCTTCAGAATGTGGGAACCTCCCATTTTACAGAGAATATGGATCACCACAAAACAATTGA
ATTTCCCTACCAGGAAGACAGACATAAGTCATGGCACATTCTATGGATCACTTACTTTTCTACCCCACCA
TGGTGAGATTTCTGGCTTTAAAAAGTTTGTACAGACATGGTTCCATGTCAGAAACACAGATTTATATTTA
GTAATGCCAGAGTGGAACTATTTTAACTATGTAAGCTCAGCATCCAATTGTAAAATACTGAAGAACAATT
CATCTGATGCCTCATTTGATTGGCTAATGGAACAGAAGTTTGACATGACCTTTAGTGAGAATAGTCATAA
CATATACAATGCTGTGCATGCCATAGCCCATGCCCTCCATGAGATGAATCTGCAACAGGCTGATAATCAG
GCAATAGGCAATGGAAAAGGAGCCAGTTCTCACTGCTTGAAGGTAAACTCCTTTCTAAGAAGGACCTACT
TCACTAATCCTCTTGGGGACAAAGTGTTTATGAAGCAAAGAGTAATAATGCAGGATGAATATGATATTAT
TCACTTTGGGAATCTCTCACAACACCTTGGGATTAAGATGAAGTTAGGAAAGTTCAGCCCATATTTACCA
CATGGTCGACACTCTCACTTATATGTAGACATGATTGAGTTGGCCACAGGAAGAAGAAAGATGCCATCCT
CTGTGTGCAGTGCAGATTGTAGTCCTGGATTCAGAAGATTGTGGAAGGAGGGAATGGCAGCCTGCTGTTT
TGTTTGCAGCCCCTGCCCAGAAAATGAAATTTCTAATGAGACAAATATGGATCAATGTGTGAATTGTCCA
GAATACCAATATGCCAACACAGAACAGAACAAATGTATTCAGAAAGGTGTCACCTTCCTAAGCTATGAAG
ACCCCTTGGGGATGGCACTTGCCTTAATGGCCTTCTGCTTCTCTGCATTCACAGCTGTGGTACTTTGTGT
CTTTGTGAAGCACCATGACACTCCTATTGTGAAGGCCAATAACAGAAGCCTCAGCTACCTATTACTCATG
TCACTCATGTTCTGTTTTCTGTGCTCCTTTTTCTTCATTGGCCTTCCAAACAGAGCCATCTGTGTCTTAC
AGCAAATCACATTTGGAATTGTATTCACTGTGGCTGTTTCCACAGTTCTGGCCAAAACAGTCACTGTGGT
TCTGGCTTTCAAAGTCACAGACCCAGGGAGAAGATTGAGAAACTTCCTGGTATCAGGGACACCCAACTAC
ATTATTCCCATATGTTCCCTACTCCAATGTGTTCTGTGTGCAATCTGGCTAGCAGTTTCTCCTCCCTTTG
TTGATATTGATGAACACACTCTCCATGGCCATATCATCATTGTGTGCAACAAGGGCTCAGATACTGCATT
CTACTGTATCCTGGGATATTTGGCCTGCCTGGCACTTGGAAGCTTCTCTCTGGCTTTCTTGGCCAAGAAT
CTGCCTGACACATTCAATGAAGCCAAATTCTTGACCTTCAGCATGCTAGTGTTCTGTAGTGTCTGGGTCA
CCTTCCTCCCTGTCTACCATAGCACCAAGGGCAAACACATGGTTGCTGTGGAGATCTTCTCCATCTTGGC
ATCCAGTGCAGGGATCCTTGGATGTATTTTTGTACCCAAGATTTATATCATTTTAATGCGACCAGAGAGA
AATTCTACCCAAAAGATCAGGGAAAAATCATATTTCTGA

Translation (852 aa):
MFIFMGVFFLLNITLLMANFINPRCFWRINLDEITDEYLGLSCTFILAAVQTPTEKDYFNKTLNVLKTTK
NHKYALALVFAMDEINRNPDLLPNMSLIIRYTLGLCDGKTVTPTPYLFHKKKQSPIPNYFCNEETMCSFL
LSGPKWDVSLSFWMYLDSFLSPRILQLTYGPFHSIFSDDEQYPYLYQMAPKDTSLALAMVSFILYLKWNW
IGLVIPDDDQGNQFLLELKKQSENKEICFAFVKMISVDDTSFPHKTEMDYNQIVMSSTNVIIIYGETRNF
IYLIFRMWEPPILQRIWITTKQLNFPTRKTDISHGTFYGSLTFLPHHGEISGFKKFVQTWFHVRNTDLYL
VMPEWNYFNYVSSASNCKILKNNSSDASFDWLMEQKFDMTFSENSHNIYNAVHAIAHALHEMNLQQADNQ
AIGNGKGASSHCLKVNSFLRRTYFTNPLGDKVFMKQRVIMQDEYDIIHFGNLSQHLGIKMKLGKFSPYLP
HGRHSHLYVDMIELATGRRKMPSSVCSADCSPGFRRLWKEGMAACCFVCSPCPENEISNETNMDQCVNCP
EYQYANTEQNKCIQKGVTFLSYEDPLGMALALMAFCFSAFTAVVLCVFVKHHDTPIVKANNRSLSYLLLM
SLMFCFLCSFFFIGLPNRAICVLQQITFGIVFTVAVSTVLAKTVTVVLAFKVTDPGRRLRNFLVSGTPNY
IIPICSLLQCVLCAIWLAVSPPFVDIDEHTLHGHIIIVCNKGSDTAFYCILGYLACLALGSFSLAFLAKN
LPDTFNEAKFLTFSMLVFCSVWVTFLPVYHSTKGKHMVAVEIFSILASSAGILGCIFVPKIYIILMRPER
NSTQKIREKSYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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