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Report for CCDS52019.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52019.1 Reviewed, update pending Mus musculus 7 Vmn2r54 23 108 98 CCDS HistoryNCBI Gene:666085Re-query CCDS DB by CCDS ID:52019.1Re-query CCDS DB by GeneID:666085See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 52019.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086210.5 ENSMUSP00000083386.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086210.5Link to Ensembl Protein Viewer:ENSMUSP00000083386.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000086210Re-query CCDS DB by Protein ID:ENSMUSP00000083386
Original member NCBI NM_001081449.2 NP_001074918.2 Removed not alive Link to Nucleotide Sequence:NM_001081449.2Link to Protein Sequence:NP_001074918.2Re-query CCDS DB by Nucleotide ID:NM_001081449Re-query CCDS DB by Protein ID:NP_001074918Link to BLAST:NP_001074918.2
Current member NCBI NM_001384946.1 NP_001371875.1 Pending alive Link to Nucleotide Sequence:NM_001384946.1Link to Protein Sequence:NP_001371875.1Re-query CCDS DB by Nucleotide ID:NM_001384946Re-query CCDS DB by Protein ID:NP_001371875Link to BLAST:NP_001371875.1

Chromosomal Locations for CCDS 52019.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12615233 12616209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12622034 12622157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12629645 12629881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12631923 12632720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12635850 12636134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2421 nt):
ATGTGGGGCTACCGGGTGACCCAGAGTTTCGTCTTTGCCATTGAGGAGATTAATAGGAGTGCTCACTTGT
TGCCCAATTTGACACTGGGCTTCTCCATTCGAAACTCTGGAGACTCAGTGCATGGAGCCCTCTATGAGAC
AATGGGCTTTCTCACAGGGCAGAAGGAGCCCATCCCCAACTACACATGCCAGCATGGCTCTCCTCAGGCT
GCCTTGGTTGGGGACACACGGTCTTCCCTGTCTGTCTCCATGGCCAGACTTCTGGGACTGTACAAGTTTC
CCCAGGTCAGTTACTCATCTTCACTACCCAGTCTGAGTGACAAGATTCAGTTTCCATCTTTTCTTCGGAC
CCTGACTAGTGACATTACATCTTCCCATGCAGTTACCCAGCTGATAATTCACTTTCAATGGTCCTGGGTG
ATCATTCTTGCCCAAGATGATGACTTTGGGCAGCAGGCCAGCTCTCTGGCCACTCAGCAGCTGAGTCCAG
CTGGGGTTTGCATTGAGTATCACCTTCACGTCCCTTCCTATCAGTCCTTGGGGAAGATTGAAGAGACTGT
CCAGAAGATGCAGAAATGTACAGCCAAAGTTGTTCTGGTTTTCTTAAGCAATTTAAATTTCCAGCTCATC
CTACGTGGTTTACTGGGTGTCCCTGTCTCAGGACAGGTGTGGGTCAGCAAAGGCACTCTGCACATGGCAC
TTGCCCTGACCATACCAGGCATTTCCCAGGTGTTGCAAGGCACATTTGGCCTTCTGTATCACAGCAGCAG
GGCTATTGGCTTCCCTGAGTTCCTTGCTCACCTGCGCCCCAGCCAGACCCCAGAAGACATGTTTATAAAG
AAGTTCTGGGAGTTCACCTTTGATTGTACATGGCCCTACCAGAACAGCACAGTGACAGAGGGTGTCCAGT
TCTGCACAGGAAATGAGAGTCTGAAAAACAAGCCACATCCATTTCCAGAAGTGAGTAAAATTGATGCTGC
TTACACAGCTGTCTACAGCATTGCCCATGCTCTGCACAATATGCTAGCCTGTGAGCACCAGGAGAGGAAA
GGTACAAATTCTCACAACTTCCATTCCTGGCAGCTGCTCCATGCCCTCAAAAAGGTACACTTCAAGACTC
TGGATGGAATCAAGATTATGTTTGATGCCAATGGAGATTTGGTGACAAAATTTGATATTTTCCAAGGGCA
GAAGACTCCTGCAGGTGTATTCCACTTGGTGCATGTAGGCATGATAGACCCTCAAGTCTCTTCTGGGAAC
AAAATGATGGTTCAGTTGAAGGAGGATCTCCAAGTAAGTTCCCTGAATGCAGAGGAAACTGTGCCCACCT
CCATCTGCAGTGAAAGCTGCCTTCCAGGGTTCAGCCAGGTACCCCGACTGGGAGCCCCCCACTGCTGTTT
TGATTGCAGTCCATGCCCTGAGGGACAGTTTACAGACCAAAGAGACATGAAGAGATGTCTTCTGTGCCCC
AAGGAGCAGTACTCGAGCCACACCAGAGACCATTGCCTGCCCAGGACAGAGATCTTCCTGGCCTTTGAGG
AACCACTGGGATTCGTATTGGCTTTGGTAGCACTCTTGCTGGCTGGTCTGGCTGTCCTGGTTCTTGGAGT
GTTCCTGAAGCACCGGGATACACCTGTGGTCAGGGCCAACAACAGAACTCTCAGCTACTTCCTCCTGATC
TCTCTTTCCCTGTGTGCCCTGTGTGCCTTGCTCTTCCTGGGGAGACCCACTGTCACCACCTGCCTCCTCC
GTCAGACCACCTTTGCTGTGGTATTCACAGTGGCTGTCTCCTCTGTTCTGGCCAAGACTCTCACAGTAGT
CCTGGCCTTCAGAGTCACCAGACCACGAAGTAGGATCCAGATATGCCTGAGCCCTGGTACTTCAACCTTT
GTGGTCCTCATTGCTTCCTTAATACAGGTTGTTCTTTGTGGGGTGTGGTTGGCCACCTCTCCACCATTCC
CAGACAAGGATATGATCTCAGAGCCCCAGCACATTGTCATCCAGTGCCAAGAGGGTTCTGGTGCCACCTT
CTTCTGTGTGCTGGGCTACTTGGGTTTCCTGGCAGGGGGTACCTTCTCTGTGGCTTTTCTAGCCAGGGGC
CTTCCAGATATCTTCAATGAGACCAAGTTCCTCACCTTCAGCATGTTGCTCTTCTGTAGTGTCTGGACAG
CCTTCCTTCCCCTGTACCACAGTGCCCGGGGAAAGTCCACTGTGGCTGTAGAGATCTTTTCCATCCTGGC
CTCCACTGCTGGGCTTCTGGGTGGCATCTTCATCCCCAAGTGCTACATCATCTTGCTGAAACCTGAGAAG
AACACTCCTGCCTGGCTAAAGCAAGGGTACTGTGCACAGCAGGAAAAACAGGGTGAGATGCTCCAGAGAA
GGTATAAATTCTCAGGGGAGTCACCAGAACCAAATATATGA

Translation (806 aa):
MWGYRVTQSFVFAIEEINRSAHLLPNLTLGFSIRNSGDSVHGALYETMGFLTGQKEPIPNYTCQHGSPQA
ALVGDTRSSLSVSMARLLGLYKFPQVSYSSSLPSLSDKIQFPSFLRTLTSDITSSHAVTQLIIHFQWSWV
IILAQDDDFGQQASSLATQQLSPAGVCIEYHLHVPSYQSLGKIEETVQKMQKCTAKVVLVFLSNLNFQLI
LRGLLGVPVSGQVWVSKGTLHMALALTIPGISQVLQGTFGLLYHSSRAIGFPEFLAHLRPSQTPEDMFIK
KFWEFTFDCTWPYQNSTVTEGVQFCTGNESLKNKPHPFPEVSKIDAAYTAVYSIAHALHNMLACEHQERK
GTNSHNFHSWQLLHALKKVHFKTLDGIKIMFDANGDLVTKFDIFQGQKTPAGVFHLVHVGMIDPQVSSGN
KMMVQLKEDLQVSSLNAEETVPTSICSESCLPGFSQVPRLGAPHCCFDCSPCPEGQFTDQRDMKRCLLCP
KEQYSSHTRDHCLPRTEIFLAFEEPLGFVLALVALLLAGLAVLVLGVFLKHRDTPVVRANNRTLSYFLLI
SLSLCALCALLFLGRPTVTTCLLRQTTFAVVFTVAVSSVLAKTLTVVLAFRVTRPRSRIQICLSPGTSTF
VVLIASLIQVVLCGVWLATSPPFPDKDMISEPQHIVIQCQEGSGATFFCVLGYLGFLAGGTFSVAFLARG
LPDIFNETKFLTFSMLLFCSVWTAFLPLYHSARGKSTVAVEIFSILASTAGLLGGIFIPKCYIILLKPEK
NTPAWLKQGYCAQQEKQGEMLQRRYKFSGESPEPNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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