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Report for CCDS52293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52293.1 Reviewed, update pending Mus musculus 7 Vmn2r71 23 108 98 CCDS HistoryNCBI Gene:233445Re-query CCDS DB by CCDS ID:52293.1Re-query CCDS DB by GeneID:233445See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 52293.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172338.2 ENSMUSP00000132337.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172338.2Link to Ensembl Protein Viewer:ENSMUSP00000132337.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172338Re-query CCDS DB by Protein ID:ENSMUSP00000132337
Original member NCBI NM_001105184.1 NP_001098654.1 Removed not alive Link to Nucleotide Sequence:NM_001105184.1Link to Protein Sequence:NP_001098654.1Re-query CCDS DB by Nucleotide ID:NM_001105184Re-query CCDS DB by Protein ID:NP_001098654Link to BLAST:NP_001098654.1
Current member NCBI NM_001384948.1 NP_001371877.1 Pending alive Link to Nucleotide Sequence:NM_001384948.1Link to Protein Sequence:NP_001371877.1Re-query CCDS DB by Nucleotide ID:NM_001384948Re-query CCDS DB by Protein ID:NP_001371877Link to BLAST:NP_001371877.1

Chromosomal Locations for CCDS 52293.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 85615462 85615658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 85618537 85618794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 85619046 85619886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 85620579 85620806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 85621152 85621275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 85623628 85624547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2568 nt):
ATGTTCTCTTTGATCTCTGTCTTCTGGTTTCTGAAGGTTAACTTTATTTTTTGTCATTTGAGTGACCCCA
GATGCTTTTGGAGAATAAAAGAAACTGAAAATAAACTAGGAGATAAAGAAACTTTTTGTTTGTTTTCTAT
TTCCACAAAGCAAGGTTATGTGAAGAATGATTATTTCAGTTGGAATCTAGACAAGCAGGTGACACCCAAG
ATCAACCATTTGATTTTCTCTGTTTATCTTGCCTTGGAAGAAATAAATAAGAACTGCCATATTTTGCCCA
ACATTTCTCTGCTAGTTAATACTGAATGTAATGGACGAAAATATGATGAGAAAACTGGTTTGGCTTTGAA
AAGTGAGAAAATTGTTCCTAATTACTCCTGCACAAATGAGAGAAGATATTTAATTGTACTTACAGCTCCT
ATATGGGCAGTATCTACAAAACTTGGACCATTCCTTTCATATTGTTGCCTATGTCCTGTATTTTTTCAGC
TTTACTGTGGTCACTTTCATCTTCTTCTGAGTGATAAAGGACAATTTCCTCATCTTTACCAGATATCTCC
CAAGGACACATCTCTACCACTAGCCATGGTGTCCCTATTTGTTCATTTCAGATGGAACTGGATAGGAGTA
ATCATTACAAATGATGACCACGGAATACAATTCCTTTCTGAATTGAAAGGAGATATGCAAAAAAGCATTG
TTTGCTTATCAGTTGCTATTATTATCCAAACTGAGGTGTACATGGCCCTTAAAGAGTTACATATGAACTA
TAAAAAAATCTTAATGTCATCAGCAAAAGTTGTGATAGTTTATGGAGACAAAGACTCTCCCATAAAGTAT
GTTCTCACAGCATGGAAATCTCAAGGCATTTTTAGAATCTGGGTTAGTGCATCACAATTTGATATGATCA
CGATACTAGGAGATTTCTTGCTATACTCCTACACTGGGACTTTTATTTTTTCACACCAGCAACCTGAAAT
ACCTGGTTTTGAAAAATTTATCCAAACAGTACACCCTTCAAACTACAGTAGTGAATTTTCCTTTGCCAAA
CTGTGGTGGACATATTTTAGATGTTCTTTGCCACCATCTAATTGTAAGAAGCTGAAGAATTGTCCAACCA
AAAGTGTATTTGCATGGTTATTCAGGACACCACTTGGAATGGCCATGAGTGATACATGCTATAACTCATA
CAATGCTATATATGCTGTGGCCCACTCACTTCATGAGATGCTTCTGCAAGAAGTAGACACATGGTCAAAG
AATGCTGGGAAGGAACTGGAATTTGACTCTTGGAAGATGTTCTCTATTTTGAAGACCTTAAAATTTGTAA
ATCCTTCTGGAGACCTAGTCAACATGAACCAGAATTTGAAACAGGATACAGAGTATGACATTTTCTATAT
CATGGATTTTCAAAAAGATTATGGACTTAAAATGAAAATAGGAAGATTTTCAGGGCATCTTCTAAGTGGT
CAACAGCTATATATGGCTAAAGAAATGATGGAGTGGGCTACAGATATTGACCAGATTCTACCCTCAATAT
GTAGTGTGCCTTGCAGTCCAGGACTCAGAAAATCCCCTCAGGAAGGAAAGGATATCTGCTGTTTTGTTTG
TAACCCCTGCCCAGAAAATGAAATTTCCAACATGACAAACATGGATCAGTGTGTAAAGTGTCTGGAAGAT
CAATATGCTAATGAAGACCATACTCTCTGTCTCCAAAAAGTTGTGGTTATTTTTGATTATAGAGACCCTT
TGGGAAAAGCTCTGGCTGGCTTTGCTCTATGCTTCTCTGTCCTTACATCTGTTGTACTCTTTGTCTTCTT
TAAACACCGAGATACTCCCATAGTCAAAGCCAATAACCAAACTCTTAGCTTTGTCCTACTCATCTCCCTC
ATATTTTGTTTTATCTGTTCCTTGCTTTACATTGGTCATCCCACTATGGTCACCTGTATTGTGCAGCAGA
TCACATTTGCCATTGGGTTCACTGTGGCTACTTCTACTATCTTGGCCAAGACAGTTATTGTAGTACTGGC
ATTCAAGATAACTGTTCCAGGAAGAAGAATGAGGTGGATGCCTGAGTCAGGAGCACCCAAATACATCATT
CTCATATGCACCATGATTCAGCTGATTCTTTGTGGAATCTGGCTTGGAACTTCTCCTCCATTTGTTGATG
CTGATGTACAAATGGTACATGGACACATCATCATTATTTGCAACAAAGGTTCAGTGATTGCCTTTTACTG
TGTCCTTGGATATATGGGCTCTCTTGCTCTAGCAAGTTTCACTGTAGCTTTCTTGGCCAGGAATCTGCCT
GATACATTCAATGAAGCCAAGCTCTTGACATTCAGCATGCTGGTGTTCTGCAGTGTCTGGATCACTTTCA
TCCCTGTCTACCACAGCACCAAAGGCAAGATTATGGCTGTCGTAGAAGTTTTCTGTATCTTGGCCTCCAG
TGCAGGGCTGCTCCTTTGCATTTTTGCCCCCAAATGCTATATTATTTTATTAAGACCACAAACAAATTAT
TTTCACAAGTTCTGGAAATCACATGCTAATTCTGAAAATAAAAGTTAA

Translation (855 aa):
MFSLISVFWFLKVNFIFCHLSDPRCFWRIKETENKLGDKETFCLFSISTKQGYVKNDYFSWNLDKQVTPK
INHLIFSVYLALEEINKNCHILPNISLLVNTECNGRKYDEKTGLALKSEKIVPNYSCTNERRYLIVLTAP
IWAVSTKLGPFLSYCCLCPVFFQLYCGHFHLLLSDKGQFPHLYQISPKDTSLPLAMVSLFVHFRWNWIGV
IITNDDHGIQFLSELKGDMQKSIVCLSVAIIIQTEVYMALKELHMNYKKILMSSAKVVIVYGDKDSPIKY
VLTAWKSQGIFRIWVSASQFDMITILGDFLLYSYTGTFIFSHQQPEIPGFEKFIQTVHPSNYSSEFSFAK
LWWTYFRCSLPPSNCKKLKNCPTKSVFAWLFRTPLGMAMSDTCYNSYNAIYAVAHSLHEMLLQEVDTWSK
NAGKELEFDSWKMFSILKTLKFVNPSGDLVNMNQNLKQDTEYDIFYIMDFQKDYGLKMKIGRFSGHLLSG
QQLYMAKEMMEWATDIDQILPSICSVPCSPGLRKSPQEGKDICCFVCNPCPENEISNMTNMDQCVKCLED
QYANEDHTLCLQKVVVIFDYRDPLGKALAGFALCFSVLTSVVLFVFFKHRDTPIVKANNQTLSFVLLISL
IFCFICSLLYIGHPTMVTCIVQQITFAIGFTVATSTILAKTVIVVLAFKITVPGRRMRWMPESGAPKYII
LICTMIQLILCGIWLGTSPPFVDADVQMVHGHIIIICNKGSVIAFYCVLGYMGSLALASFTVAFLARNLP
DTFNEAKLLTFSMLVFCSVWITFIPVYHSTKGKIMAVVEVFCILASSAGLLLCIFAPKCYIILLRPQTNY
FHKFWKSHANSENKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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