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Report for CCDS28782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28782.1 Public Mus musculus 17 Pgk2 23 108 98 CCDS HistoryNCBI Gene:18663Re-query CCDS DB by CCDS ID:28782.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28782.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033585.6 ENSMUSP00000033585.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033585.6Link to Ensembl Protein Viewer:ENSMUSP00000033585.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033585Re-query CCDS DB by Protein ID:ENSMUSP00000033585
Original member Current member NCBI NM_031190.2 NP_112467.2 Accepted alive Link to Nucleotide Sequence:NM_031190.2Link to Protein Sequence:NP_112467.2Re-query CCDS DB by Nucleotide ID:NM_031190Re-query CCDS DB by Protein ID:NP_112467Link to BLAST:NP_112467.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112467.2 417 P09041 417 100% 0 0

Chromosomal Locations for CCDS 28782.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40207282 40208535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGGCTCTTTCTGCTAAGTTGACTCTGGACAAAGTGGATCTTAAGGGAAAAAGAGTAATCATGAGAGTAG
ACTTCAACGTTCCCATGAAGAATAACCAAATTACAAACAACCAGAGAATCAAGGCTGCCATCCCAAGTAT
CAAGCACTGTCTGGACAATGGAGCCAAGTCCGTAGTTCTCATGAGTCACCTCGGTCGGCCTGATGGTATC
CCTATGCCAGACAAGTATTCATTAGAGCCTGTTGCTGATGAGCTCAAGTCCCTGCTGAACAAGGACGTCA
TATTCTTGAAGGACTGTGTGGGCCCTGAAGTAGAGCAAGCCTGTGCCAACCCAGATAATGGGTCTATCAT
CCTGCTGGAGAACCTGCGCTTCCATGTGGAGGAAGAAGGTAAGGGTAAAGATTCTTCTGGAAAAAAGATT
AGTGCTGACCCTGCTAAAGTAGAAGCCTTCCAAGCATCACTGTCTAAACTTGGCGATGTCTATGTCAACG
ATGCATTTGGCACTGCACATCGGGCTCACAGTTCTACGGTCGGAGTAAATTTGCCCCAGAAGGCATCTGG
TTTCCTTATGAAGAAGGAACTGGATTATTTTTCCAAGGCTTTAGAAAAGCCAGAGAGGCCCTTCCTGGCT
ATCCTTGGTGGAGCCAAAGTGAAAGACAAGATCCAACTCATTAAAAATATGTTAGACAAAGTCAATTTCA
TGATTATTGGTGGTGGAATGGCTTACACCTTCCTGAAAGAACTCAAGAACATGCAGATTGGTGCTTCCTT
GTTTGATGAAGAGGGAGCCACGATTGTTAAAGAGATCATGGAAAAAGCAGAAAAGAATGGTGTAAAGATA
GTTTTTCCTGTTGACTTTGTTACTGGTGACAAGTTTGATGAGAATGCTAAAGTTGGACAAGCCACTATAG
AATCTGGTATACCATCTGGTTGGATGGGCTTGGACTGTGGCCCTGAGAGCATTAAAATCAATGCTCAAAT
TGTGGCCCAAGCAAAGCTGATAGTTTGGAATGGACCTATTGGGGTATTTGAATGGGATGCCTTTGCTAAA
GGAACCAAAGCTCTCATGGATGAAGTTGTAAAGGCCACCTCCAATGGCTGTGTCACCATTATAGGAGGCG
GAGATACTGCTACTTGCTGCGCCAAATGGGGCACTGAAGACAAGGTCAGCCATGTGAGCACAGGAGGTGG
GGCAAGTCTTGAGCTTCTGGAAGGTAAAATCCTTCCAGGGGTAGAGGCCCTCAGCAACATGTAA

Translation (417 aa):
MALSAKLTLDKVDLKGKRVIMRVDFNVPMKNNQITNNQRIKAAIPSIKHCLDNGAKSVVLMSHLGRPDGI
PMPDKYSLEPVADELKSLLNKDVIFLKDCVGPEVEQACANPDNGSIILLENLRFHVEEEGKGKDSSGKKI
SADPAKVEAFQASLSKLGDVYVNDAFGTAHRAHSSTVGVNLPQKASGFLMKKELDYFSKALEKPERPFLA
ILGGAKVKDKIQLIKNMLDKVNFMIIGGGMAYTFLKELKNMQIGASLFDEEGATIVKEIMEKAEKNGVKI
VFPVDFVTGDKFDENAKVGQATIESGIPSGWMGLDCGPESIKINAQIVAQAKLIVWNGPIGVFEWDAFAK
GTKALMDEVVKATSNGCVTIIGGGDTATCCAKWGTEDKVSHVSTGGGASLELLEGKILPGVEALSNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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