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Report for CCDS19086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19086.1 Public Mus musculus 5 Abcb4 23 108 98 CCDS HistoryNCBI Gene:18670Re-query CCDS DB by CCDS ID:19086.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19086.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003717.12 ENSMUSP00000003717.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003717.12Link to Ensembl Protein Viewer:ENSMUSP00000003717.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003717Re-query CCDS DB by Protein ID:ENSMUSP00000003717
Original member Current member NCBI NM_008830.2 NP_032856.2 Accepted alive Link to Nucleotide Sequence:NM_008830.2Link to Protein Sequence:NP_032856.2Re-query CCDS DB by Nucleotide ID:NM_008830Re-query CCDS DB by Protein ID:NP_032856Link to BLAST:NP_032856.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032856.2 1276 P21440 1276 100% 0 0

Chromosomal Locations for CCDS 19086.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 8894094 8894164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8896573 8896627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8899568 8899718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8905975 8906032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8907208 8907399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8909102 8909273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8910619 8910743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8914956 8915127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8918659 8918772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8920020 8920130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8920335 8920460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8927771 8927974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8928407 8928577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8930742 8930903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8934156 8934326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8935176 8935322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8936785 8936889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8938579 8938656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8939834 8939917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8940911 8941114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8946019 8946119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8947297 8947437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8949949 8950105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8950660 8950857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8955389 8955595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8958311 8958457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8958969 8959175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3831 nt):
ATGGATCTTGAGGCAGCGAGAAACGGAACAGCACGGCGCCTGGACGGCGACTTTGAACTAGGCAGCATCA
GCAACCAAGGCAGAGAAAAGAAGAAGAAAGTGAATTTAATTGGCCTGTTGACACTGTTCCGATACTCTGA
CTGGCAGGATAAATTGTTTATGTTCCTGGGCACCCTCATGGCCATAGCTCATGGATCAGGTCTTCCCCTC
ATGATGATAGTCTTTGGAGAAATGACAGATAAGTTTGTAGATAATACTGGGAACTTTTCCTTGCCAGTGA
ATTTTTCATTGTCAATGCTAAATCCAGGAAGAATTTTGGAAGAAGAAATGACTAGATATGCATACTACTA
TTCGGGACTAGGTGGTGGAGTTCTTGTGGCTGCCTATATCCAAGTCTCATTCTGGACTTTGGCAGCTGGC
CGACAAATAAAGAAAATCAGGCAAAAATTTTTTCATGCCATCCTCCGACAAGAAATGGGCTGGTTTGACA
TCAAGGGCACCACTGAACTCAACACACGTCTAACAGATGACGTCTCCAAAATCAGTGAAGGAATTGGTGA
CAAGGTTGGAATGTTCTTTCAAGCAATAGCCACGTTTTTTGCAGGATTCATAGTGGGGTTCATCAGAGGA
TGGAAGCTCACCCTCGTGATCATGGCCATCAGCCCCATCCTGGGGCTCTCTACAGCTGTTTGGGCAAAGA
TACTCTCAACATTTAGTGACAAAGAGCTAGCTGCATATGCAAAAGCAGGTGCCGTGGCTGAAGAGGCTCT
GGGAGCCATCAGGACCGTGATAGCTTTCGGGGGCCAGAACAAAGAGCTAGAAAGGTATCAGAAACATTTA
GAAAATGCCAAAAAGATTGGAATTAAAAAGGCTATCTCAGCCAACATCTCCATGGGTATTGCTTTCTTGT
TAATATATGCATCCTATGCACTGGCCTTCTGGTATGGATCCACTCTGGTTATATCAAAAGAATATACAAT
TGGAAATGCAATGACAGTCTTCTTCTCAATCCTCATCGGGGCTTTCAGTGTGGGGCAGGCTGCCCCCTGT
ATTGATGCTTTCGCTAATGCAAGAGGAGCAGCCTATGTGATCTTTGACATTATTGATAATAATCCTAAAA
TTGACAGTTTTTCAGAGAGAGGACACAAACCAGACAACATCAAAGGAAATTTGGAGTTCAGTGATGTTCA
TTTTTCCTATCCATCTCGGGCTAATATCAAGATCTTGAAGGGCCTCAACCTGAAGGTGAAGAGTGGACAG
ACAGTGGCTCTGGTTGGCAACAGCGGCTGTGGAAAAAGCACAACTGTCCAGCTGCTGCAGAGGCTCTACG
ACCCCACAGAGGGTAAGATTAGCATCGATGGGCAGGATATCAGGAACTTTAACGTCAGGTGTCTAAGGGA
AATCATTGGTGTGGTAAGTCAAGAGCCCGTGCTGTTCTCTACTACGATCGCTGAAAATATCCGCTATGGC
CGTGGGAATGTAACGATGGATGAGATTGAGAAAGCCGTCAAAGAGGCCAATGCCTATGACTTCATCATGA
AACTGCCCCAGAAATTTGACACCCTGGTTGGTGATAGAGGGGCGCAGCTGAGTGGGGGACAGAAACAGAG
AATCGCCATTGCCCGGGCCCTGGTCCGCAACCCCAAGATCCTCCTGCTGGACGAGGCCACCTCAGCCCTG
GACACTGAAAGTGAAGCTGAGGTGCAGGCCGCACTGGATAAGGCCAGAGAAGGCCGAACCACCATTGTGA
TAGCTCACCGATTGTCTACCATCCGGAACGCAGATGTCATCGCTGGGTTTGAGGATGGAGTCATTGTGGA
ACAAGGAAGTCACAGTGAGCTGATGAAGAAGGAAGGGATCTACTTCAGACTCGTTAACATGCAGACAGCA
GGAAGCCAGATCCTGTCAGAAGAATTTGAAGTTGAGCTAAGTGACGAAAAGGCTGCTGGAGATGTGGCCC
CAAATGGCTGGAAAGCACGCATATTTAGGAATTCTACAAAGAAAAGTCTTAAAAGTCCACATCAGAATAG
GCTGGATGAAGAAACCAATGAACTTGATGCAAACGTGCCACCAGTGTCTTTTCTGAAGGTCTTAAAACTG
AATAAAACAGAGTGGCCCTACTTTGTGGTGGGAACAGTCTGTGCCATTGCCAATGGAGCCCTCCAGCCGG
CTTTCTCCATCATCCTGTCTGAGATGATAGCTATCTTTGGCCCTGGGGATGACGCAGTGAAGCAGCAAAA
GTGTAACATGTTCTCCCTGGTCTTCTTGGGCCTAGGAGTCCTCTCCTTCTTTACTTTCTTCCTTCAGGGC
TTCACGTTTGGGAAAGCTGGAGAGATCCTCACCACAAGGCTCCGGTCCATGGCCTTTAAAGCGATGCTAA
GGCAGGACATGAGCTGGTTTGATGATCATAAAAACAGTACTGGAGCACTTTCTACAAGACTCGCCACAGA
TGCTGCGCAAGTCCAAGGAGCCACGGGAACCAGGTTGGCTTTAATTGCACAGAACACAGCCAACCTTGGA
ACCGGTATTATTATATCATTTATTTACGGTTGGCAACTGACACTTCTGCTGTTATCGGTTGTTCCATTCA
TTGCTGTAGCAGGAATTGTTGAAATGAAAATGTTGGCTGGCAATGCCAAGAGAGATAAAAAGGAAATGGA
AGCTGCTGGAAAGATTGCAACAGAGGCAATAGAAAATATTCGAACTGTTGTATCCTTGACCCAAGAAAGA
AAATTTGAGTCAATGTATGTTGAAAAATTGCATGGACCTTACAGGAATTCGGTGCGGAAGGCACACATCT
ACGGCATCACTTTTAGCATCTCCCAAGCATTCATGTATTTTTCTTATGCTGGCTGTTTTCGATTTGGTTC
TTACCTAATTGTGAATGGACATATGCGCTTCAAAGATGTCATTCTGGTCTTTTCTGCAATTGTGCTTGGC
GCGGTGGCTCTAGGACACGCCAGCTCATTTGCTCCGGACTATGCAAAAGCCAAGCTGTCTGCAGCATACT
TGTTCAGCCTGTTTGAAAGACAACCTCTGATTGACAGCTACAGTGGAGAAGGGCTGTGGCCTGATAAGTT
TGAAGGAAGCGTGACATTTAATGAAGTCGTGTTCAACTATCCCACCCGGGCCAACGTGCCAGTGCTTCAG
GGGCTGAGCCTTGAGGTGAAGAAGGGCCAGACGCTGGCCCTGGTGGGCAGCAGTGGCTGCGGGAAGAGCA
CAGTGGTCCAGCTGCTCGAGCGCTTCTATGACCCCATGGCTGGATCAGTGCTCTTAGATGGTCAAGAAGC
AAAGAAACTCAATGTCCAGTGGCTCCGAGCTCAACTGGGCATTGTGTCCCAGGAACCCATTCTCTTTGAC
TGCAGCATCGCAGAGAACATCGCCTATGGAGACAACAGCCGGGTCGTGCCTCATGATGAGATTGTGAGGG
CAGCCAAGGAGGCCAACATCCACCCCTTCATCGAGACGCTGCCCCAAAAATATAACACAAGAGTAGGAGA
CAAGGGGACGCAGCTCTCTGGGGGCCAGAAGCAGAGGATTGCCATCGCCCGAGCCCTCATCAGACAGCCT
CGGGTCCTACTGCTGGATGAAGCCACGTCAGCTCTGGATACTGAGAGTGAAAAGGTTGTCCAGGAAGCAC
TGGACAAAGCCAGGGAAGGCCGCACCTGCATTGTGATCGCTCACCGCCTGTCCACCATCCAGAACGCGGA
CTTGATCGTGGTGATTGAGAACGGCAAGGTCAAGGAGCACGGCACCCACCAGCAGCTGCTGGCGCAGAAG
GGCATCTATTTCTCAATGGTCAACATCCAGGCCGGCACACAGAACTTATGA

Translation (1276 aa):
MDLEAARNGTARRLDGDFELGSISNQGREKKKKVNLIGLLTLFRYSDWQDKLFMFLGTLMAIAHGSGLPL
MMIVFGEMTDKFVDNTGNFSLPVNFSLSMLNPGRILEEEMTRYAYYYSGLGGGVLVAAYIQVSFWTLAAG
RQIKKIRQKFFHAILRQEMGWFDIKGTTELNTRLTDDVSKISEGIGDKVGMFFQAIATFFAGFIVGFIRG
WKLTLVIMAISPILGLSTAVWAKILSTFSDKELAAYAKAGAVAEEALGAIRTVIAFGGQNKELERYQKHL
ENAKKIGIKKAISANISMGIAFLLIYASYALAFWYGSTLVISKEYTIGNAMTVFFSILIGAFSVGQAAPC
IDAFANARGAAYVIFDIIDNNPKIDSFSERGHKPDNIKGNLEFSDVHFSYPSRANIKILKGLNLKVKSGQ
TVALVGNSGCGKSTTVQLLQRLYDPTEGKISIDGQDIRNFNVRCLREIIGVVSQEPVLFSTTIAENIRYG
RGNVTMDEIEKAVKEANAYDFIMKLPQKFDTLVGDRGAQLSGGQKQRIAIARALVRNPKILLLDEATSAL
DTESEAEVQAALDKAREGRTTIVIAHRLSTIRNADVIAGFEDGVIVEQGSHSELMKKEGIYFRLVNMQTA
GSQILSEEFEVELSDEKAAGDVAPNGWKARIFRNSTKKSLKSPHQNRLDEETNELDANVPPVSFLKVLKL
NKTEWPYFVVGTVCAIANGALQPAFSIILSEMIAIFGPGDDAVKQQKCNMFSLVFLGLGVLSFFTFFLQG
FTFGKAGEILTTRLRSMAFKAMLRQDMSWFDDHKNSTGALSTRLATDAAQVQGATGTRLALIAQNTANLG
TGIIISFIYGWQLTLLLLSVVPFIAVAGIVEMKMLAGNAKRDKKEMEAAGKIATEAIENIRTVVSLTQER
KFESMYVEKLHGPYRNSVRKAHIYGITFSISQAFMYFSYAGCFRFGSYLIVNGHMRFKDVILVFSAIVLG
AVALGHASSFAPDYAKAKLSAAYLFSLFERQPLIDSYSGEGLWPDKFEGSVTFNEVVFNYPTRANVPVLQ
GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVLLDGQEAKKLNVQWLRAQLGIVSQEPILFD
CSIAENIAYGDNSRVVPHDEIVRAAKEANIHPFIETLPQKYNTRVGDKGTQLSGGQKQRIAIARALIRQP
RVLLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIENGKVKEHGTHQQLLAQK
GIYFSMVNIQAGTQNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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