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Report for CCDS236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
236.1 Public Homo sapiens 1 E2F2 24 110 108 CCDS HistoryNCBI Gene:1870Re-query CCDS DB by CCDS ID:236.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 236.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361729.3 ENSP00000355249.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361729.3Link to Ensembl Protein Viewer:ENSP00000355249.2Re-query CCDS DB by Nucleotide ID:ENST00000361729Re-query CCDS DB by Protein ID:ENSP00000355249
Original member Current member NCBI NM_004091.4 NP_004082.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004091.4Link to Protein Sequence:NP_004082.1Re-query CCDS DB by Nucleotide ID:NM_004091Re-query CCDS DB by Protein ID:NP_004082Link to BLAST:NP_004082.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004082.1 437 Q14209 437 100% 0 0

Chromosomal Locations for CCDS 236.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 23509880 23510148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23516335 23516527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23519016 23519130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23520913 23521071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23521837 23522056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23524383 23524488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23530542 23530793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGCTGCAAGGGCCCCGGGCCTTGGCTTCGGCCGCTGGGCAGACCCCGAAGGTGGTGCCCGCGATGAGCC
CCACAGAGCTGTGGCCATCCGGCCTCAGCAGCCCCCAGCTCTGCCCAGCTACTGCTACCTACTACACACC
GCTGTACCCGCAGACGGCGCCTCCCGCAGCGGCGCCAGGCACCTGCCTCGACGCCACTCCCCACGGACCC
GAGGGCCAAGTTGTGCGATGCCTGCCGGCAGGCCGGCTGCCGGCCAAAAGGAAGCTGGATCTGGAGGGGA
TTGGGAGGCCCGTCGTCCCTGAGTTCCCAACCCCCAAGGGGAAGTGCATCAGAGTGGATGGCCTCCCCAG
CCCCAAAACCCCCAAATCCCCCGGGGAGAAGACTCGGTATGACACTTCGCTGGGGCTGCTCACCAAGAAG
TTCATTTACCTCCTGAGCGAGTCAGAGGATGGGGTCCTGGACCTGAACTGGGCCGCTGAGGTGCTGGACG
TGCAGAAGCGGCGCATCTATGACATCACCAACGTGCTGGAAGGCATCCAGCTCATCCGCAAGAAGGCCAA
GAACAACATCCAGTGGGTAGGCAGGGGAATGTTTGAAGACCCCACCAGACCTGGGAAGCAGCAACAGCTG
GGGCAGGAGCTGAAGGAGCTGATGAACACGGAGCAGGCCTTGGACCAGCTCATCCAGAGCTGCTCTCTGA
GCTTCAAGCACCTGACTGAGGACAAGGCCAACAAGAGGCTGGCCTATGTGACTTACCAGGATATCCGTGC
TGTTGGCAACTTTAAGGAGCAGACAGTGATTGCCGTCAAGGCCCCTCCGCAGACGAGACTGGAAGTGCCC
GACAGGACTGAGGACAACCTGCAGATATATCTCAAGAGCACCCAAGGGCCCATCGAAGTCTACCTGTGCC
CAGAGGAGGTGCAGGAGCCGGACAGTCCTTCCGAGGAGCCTCTCCCCTCTACCTCCACCCTCTGCCCCAG
CCCTGACTCTGCCCAGCCCAGCAGCAGCACCGACCCTAGCATCATGGAGCCCACAGCATCCTCAGTGCCA
GCACCAGCGCCAACCCCCCAGCAGGCCCCACCGCCTCCATCCCTGGTCCCCTTGGAGGCTACTGACAGCC
TGCTGGAGCTGCCGCACCCACTCCTGCAGCAGACTGAGGACCAGTTCCTGTCCCCGACCCTGGCGTGCAG
CTCCCCTCTGATCAGCTTCTCCCCATCCTTGGACCAGGACGACTACCTGTGGGGCTTGGAGGCGGGTGAG
GGCATCAGCGATCTCTTCGACTCCTACGACCTTGGGGACCTGTTGATTAATTGA

Translation (437 aa):
MLQGPRALASAAGQTPKVVPAMSPTELWPSGLSSPQLCPATATYYTPLYPQTAPPAAAPGTCLDATPHGP
EGQVVRCLPAGRLPAKRKLDLEGIGRPVVPEFPTPKGKCIRVDGLPSPKTPKSPGEKTRYDTSLGLLTKK
FIYLLSESEDGVLDLNWAAEVLDVQKRRIYDITNVLEGIQLIRKKAKNNIQWVGRGMFEDPTRPGKQQQL
GQELKELMNTEQALDQLIQSCSLSFKHLTEDKANKRLAYVTYQDIRAVGNFKEQTVIAVKAPPQTRLEVP
DRTEDNLQIYLKSTQGPIEVYLCPEEVQEPDSPSEEPLPSTSTLCPSPDSAQPSSSTDPSIMEPTASSVP
APAPTPQQAPPPPSLVPLEATDSLLELPHPLLQQTEDQFLSPTLACSSPLISFSPSLDQDDYLWGLEAGE
GISDLFDSYDLGDLLIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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