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Report for CCDS21330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21330.1 Public Mus musculus 7 Otud7a 23 108 98 CCDS HistoryNCBI Gene:170711Re-query CCDS DB by CCDS ID:21330.1Re-query CCDS DB by GeneID:170711See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21330.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058476.13 ENSMUSP00000057282.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058476.13Link to Ensembl Protein Viewer:ENSMUSP00000057282.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058476Re-query CCDS DB by Protein ID:ENSMUSP00000057282
Original member Current member NCBI NM_130880.1 NP_570950.1 Accepted alive Link to Nucleotide Sequence:NM_130880.1Link to Protein Sequence:NP_570950.1Re-query CCDS DB by Nucleotide ID:NM_130880Re-query CCDS DB by Protein ID:NP_570950Link to BLAST:NP_570950.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570950.1 926 Q8R554 926 100% 0 0

Chromosomal Locations for CCDS 21330.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 63650815 63650965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 63685369 63685551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 63697011 63697232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 63727418 63727519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 63729062 63729189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 63729814 63729908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 63733664 63733791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 63735799 63735948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 63754632 63754746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 63754916 63755000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 63757310 63758731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGGTCTCTAGCCTGCTTCCAAACCCGCCCTCGGCTGAGTGCTGGGCAGCACTTCTACATGATCCTATGA
CGCTTGATATGGACGCAGTCCTGTCAGACTTTGTTCGGTCCACGGGGGCAGAACCTGGTCTGGCCAGAGA
TCTGCTGGAAGGTAAAAACTGGGACCTGACAGCTGCACTAAGCGACTATGAGCAACTGCGACAGGTGCAC
ACAGCCAACCTGCCACATGTGTTCAACGAAGGGAGGTGTGCCAAGCAGGCCGAGCGAGAATTGCCCCAGC
CTGGGCACAAGGTGGAGCGGCCTTGCCTGCAGAGGCAGGACGATATTGCCCAAGCAGAGAAGCGCCTGTC
CCGGGGGATCTCCCATGCCAGCTCAGCCATCGTCTCCCTGGCCCGATCCCACGTGGCAAATGAGTGCAAC
AATGAGCAGTTCCCACTGGAGATGCCCATCTATACATTCCAGCTGCCGGACCTGAGCGTGTACAGTGAGG
ACTTCAGGAGCTTCATCGAACGGGACCTGATCGAGCAGGCCACTATGGTAGCTCTGGAGCAAGCAGGTCG
CCTGAACTGGTGGTCTACCGTGTGCACGAGCTGTAAAAGGCTTCTTCCTTTGGCCACAACAGGAGATGGG
AACTGCCTCTTACATGCCGCCTCGCTAGGAATGTGGGGCTTTCATGACCGGGACCTGGTTTTGCGGAAAG
CTCTCTACACCATGATGAGGACGGGTGCTGAGCGGGAAGCCCTGAAGCGGAGGTGGAGGTGGCAGCAGAC
ACAGCAGAACAAGGAGGAGGAATGGGAGCGAGAGTGGACAGAGCTGCTAAAACTGGCCTCCAGCGAGCCT
CGCACACACTTCAGCAAGAATGGCAGTGGCACAGGTGGTGGTGTGGACAACTCTGAGGACCCTGTATATG
AAAGCCTGGAAGAGTTCCATGTCTTTGTCCTCGCCCACATACTACGGAGACCCATTGTGGTGGTGGCAGA
CACCATGCTAAGAGACTCTGGTGGAGAAGCATTTGCACCCATCCCATTCGGAGGGATCTACCTGCCCTTG
GAGGTGCCTCCCAACAGGTGCCACTGCTCACCCCTGGTTCTGGCCTACGATCAAGCTCACTTTTCAGCCC
TAGTGTCCATGGAACAGAGAGACCAACAGAGAGAACAAGCTGTGATCCCTCTGACGGATTCGGAACACAA
GCTGCTGCCCTTGCACTTTGCTGTGGACCCGGGAAAGGACTGGGAATGGGGGAAAGATGACAACGACAAT
GCCCGGTTAGCCAACCTCATCCTGTCCCTAGAAGCCAAGCTGAACCTTCTACACAGCTACATGAATGTGA
CGTGGATCCGCATCCCCTCCGAGACCCGGGCTCCCCTTGCACAGCCAGAGTCTCCAACGGCCTCAGCAGG
GGAGGATGTACAGTCCCTGGCGGAATCGCTGGACTCGGACCGCGATTCTGTGTGCAGCAATTCCAACAGC
AATAATGGCAAGAATGGTAAGGACAAAGAGAAGGAGAAACAGCGCAAGGACAAGGACAAGACGCGCGCGG
ACTCCGTGGCCAACAAGCTGGGCAGCTTCAGCAAGACGCTGGGCATCAAGCTAAAGAAAAACATGGGCGG
GCTAGGCGGCCTGGTGCACGGTAAGATGGGTCGTGCCAACTCTGCCAACGGCAAAAACGGCGACAGCGCT
GAGCGCAACAAGGAGAAAAAGTCCAAGTCGCGCAAGGGCAGCAAGGAGGAATCGGGAGCGTCAGCGAGCA
CCTCGCCGTCGGAGAAGACCACGCCGTCGCCCACGGACAAAGCGTCGGGAGCGTCGCCGGCCGACAAGGG
GAGCGGGTCAAGAGGCGATGCCTGGAAGTACAGCACGGACGTAAAGCTGAGCCTCAACATCCTGCGCGCC
GCCATGCAAGGCGAGCGCAAATTCATCTTCGCCGGCCTGCTGCTCACCAGCCACCGGCACCAGTTTCACG
AGGAGATGATCGGCTACTACCTGACCAGCGCGCAGGAGCGCTTTAGCGCGGAGCAAGAACAGCGGCGGCG
GGACGCCGCGGCGGCTGCCGCAGCAGCCACGGCCACCGCCACGGTCAAGCGGCCAGCGCGCAGGCCAGAG
GCCGAAGGTGCGCCGGGCCCGGAGCGCGCCTCGCCGGGCCCGACAGCCGCGCAGCCCACGCAGCTGGTGC
TCAAGCTCAAGGAGCGGCCGAGCCCCGGGACTGGAGCGAGCGCACGGGCGGCTCGGGCGGCGGGCGGCGC
AGCATCCCCGGGTCCGGGCGGCGGCGCGCGACGCGCGGCTCCCGGTACGGGCGGACCGACTCCCGGCCGC
AGCCCGCCCGCGCCCGCGCGCCAGAGCGTCATCCACGTGCAGGCGGCGGCCCGGGACGAGGCGTGCGCGC
CGACAGTGGGCGCGCTACGGCCGTGCGCGACGTACCCGCAGCAGAACCGCTCGCTGTGGTCGCAGAGCTA
CAGCCCAGCGCGCAGCGCGCTGCGCACCGTCAATACAGTGGAGTCCCTGGCGCCCGGAGGAGCGGACGCC
CCGGGACCCGCGGAGCACAAGTCGCAGACCTACAGCAACGGCTTCGGCGCAGCCCGCGACGGGCTGGAGT
TCGCCGACGCCGACGCGCCGGCCGCGCGCTCGAACGCTGAGTGCGGCCGCGGAGGCCCGGGGCCCGCTCA
GCGGCGCTGCCAGCGGGAGAACTGCGCGTTCTACGGGCGCGCGGAGACCGAGCACTTCTGCTCCTATTGC
TACCGAGAGGAGCTGCGGCGGCGGCGCGAGGCGCGCGCGGCGCGACCCTGA

Translation (926 aa):
MVSSLLPNPPSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYEQLRQVH
TANLPHVFNEGRCAKQAERELPQPGHKVERPCLQRQDDIAQAEKRLSRGISHASSAIVSLARSHVANECN
NEQFPLEMPIYTFQLPDLSVYSEDFRSFIERDLIEQATMVALEQAGRLNWWSTVCTSCKRLLPLATTGDG
NCLLHAASLGMWGFHDRDLVLRKALYTMMRTGAEREALKRRWRWQQTQQNKEEEWEREWTELLKLASSEP
RTHFSKNGSGTGGGVDNSEDPVYESLEEFHVFVLAHILRRPIVVVADTMLRDSGGEAFAPIPFGGIYLPL
EVPPNRCHCSPLVLAYDQAHFSALVSMEQRDQQREQAVIPLTDSEHKLLPLHFAVDPGKDWEWGKDDNDN
ARLANLILSLEAKLNLLHSYMNVTWIRIPSETRAPLAQPESPTASAGEDVQSLAESLDSDRDSVCSNSNS
NNGKNGKDKEKEKQRKDKDKTRADSVANKLGSFSKTLGIKLKKNMGGLGGLVHGKMGRANSANGKNGDSA
ERNKEKKSKSRKGSKEESGASASTSPSEKTTPSPTDKASGASPADKGSGSRGDAWKYSTDVKLSLNILRA
AMQGERKFIFAGLLLTSHRHQFHEEMIGYYLTSAQERFSAEQEQRRRDAAAAAAAATATATVKRPARRPE
AEGAPGPERASPGPTAAQPTQLVLKLKERPSPGTGASARAARAAGGAASPGPGGGARRAAPGTGGPTPGR
SPPAPARQSVIHVQAAARDEACAPTVGALRPCATYPQQNRSLWSQSYSPARSALRTVNTVESLAPGGADA
PGPAEHKSQTYSNGFGAARDGLEFADADAPAARSNAECGRGGPGPAQRRCQRENCAFYGRAETEHFCSYC
YREELRRRREARAARP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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